DreEX0060023 @ danRer10
Exon Skipping
Gene
ENSDARG00000014101 | pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:ZFIN;Acc:ZDB-GENE-050506-147]
Coordinates
chr13:40189366-40190475:-
Coord C1 exon
chr13:40190300-40190475
Coord A exon
chr13:40189551-40189570
Coord C2 exon
chr13:40189366-40189459
Length
20 bp
Sequences
Splice sites
3' ss Seq
TTTTATCATTCCTTTCATAGGTC
3' ss Score
11.11
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CGGTGAGGGAGGAGTTACGGAGTTTGAGCTCTGGGTTTGAGGGCCACCCGGACTCGTCATGGCTGTGTCAGTCAGAGCAGGTCGCGCGCACAGAGCCTTTATTTCAGTCACACAGCGATGCAGCCACAGCAGCACTGCCCTCAAACCTCAGTATGACGCAGTTATTATCGGTGCAG
Seq A exon
GTCACAATGGCCTCATTGCT
Seq C2 exon
TCAGCATATCTGCAGAAGGGAGGCCTGAGAACAGCAGTGCTGGAGCGCAGACATGTGCTTGGGGGAGCAGCTGTGTCTGAAGAGATCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014101_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=10.0)
A:
PF134501=NAD_binding_8=FE(9.2=100)
C2:
PF134501=NAD_binding_8=FE(47.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGTCACACAGCGATGCA
R:
CTGTTCTCAGGCCTCCCTTCT
Band lengths:
109-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]