MmuEX6032962 @ mm9
Exon Skipping
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42821987-42827265:-
Coord C1 exon
chr19:42826827-42827265
Coord A exon
chr19:42823874-42823893
Coord C2 exon
chr19:42821987-42822080
Length
20 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTGTCTCGTTGCAGGAC
3' ss Score
12.05
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TAGCCCACTACCGGGCCTGGGAGAACCTAGTTAAATTGTTCTCTCTTTGGTCCCTACTCGCTTGACTCCTGGAGGCTACTCAGACTCTGCCACCTACTCGCTTGACTCCTCGAAGCTACTCAGACTCTGCCAGTTCTTAGCCTACATGCCCCCTCCTCTAGGCTGGCTTGCGCAAACTCAGAGCCGCAGAAGCTCGGACCCTGGGAAACGGTGGCCCAAGGCCAAGGCTGACACTGAACTGTAACTCCCAGCCCCTCCCCTTGCCTGGGCCTCTGGAAAGCTGACTGTGCAAGCAAATTGCTGGGGGCAGAAATGGCTGCCGGCGGCCGAGGTCTCATCAGGGCCTTGCACTCCTCTCCCTGCCCTACTTGGAAACGAGCTCAGTCGGGAGCCAACGGGCGCCTGAAGCCCGAGTACGATGCCGTGGTGATAGGAGCAG
Seq A exon
GACACAATGGGCTGGTGGCT
Seq C2 exon
GCAGCGTACCTCCAGAGACTGGGGGTGAACACCGCGGTCTTCGAGAGGCGCCATGTGATTGGGGGCGCAGCTGTCACGGAGGAGATCATTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.9=9.3)
A:
PF134501=NAD_binding_8=FE(10.3=100)
C2:
PF134501=NAD_binding_8=FE(53.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTACTTGGAAACGAGCTC
R:
GGTGTTCACCCCCAGTCTCT
Band lengths:
111-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: