GgaEX1047483 @ galGal4
Exon Skipping
Gene
ENSGALG00000007014 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr6:21794644-21795387:+
Coord C1 exon
chr6:21794644-21794812
Coord A exon
chr6:21795083-21795102
Coord C2 exon
chr6:21795294-21795387
Length
20 bp
Sequences
Splice sites
3' ss Seq
ACCCCCTTCTCTCCTTGCAGGGC
3' ss Score
13.69
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATGAAAGCAAAGTCCAGGAGCTACCAGCACAGCACAGAGATGTTGGCTGGGCTCCGTGCATGCCTGGGTGCAGGCTGTGCTGCCCACGGGCTGCGGGGGCATCGCCTGGCTCATAGTAGGACCACAGAAAAGCTGCAGCGAGAGTATGATGCCGTGGTGATCGGGGCAG
Seq A exon
GGCACAACGGGCTGGTGGCA
Seq C2 exon
GCTGCCTATCTGCAGCAGGCAGGGCTGCGCACGGCTGTGCTGGAGAAACGCCATGTGCTGGGTGGCGCGGCTGTTACTGAGGAGATTGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007014_MULTIEX1-1/13=C1-2
Average complexity
S
Mappability confidence:
100%=100=94%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=7.0)
A:
PF134501=NAD_binding_8=FE(9.4=100)
C2:
PF134501=NAD_binding_8=FE(48.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGTATGATGCCGTGGTG
R:
AATCTCCTCAGTAACAGCCGC
Band lengths:
118-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]