RnoEX0071855 @ rn6
Exon Skipping
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261981552-261986759:-
Coord C1 exon
chr1:261986630-261986759
Coord A exon
chr1:261983651-261983670
Coord C2 exon
chr1:261981552-261981645
Length
20 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTGTCTCCTTGCAGGAC
3' ss Score
13.62
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GAAATGGCTGCCAGCGGCCGAGGTCTCAGCAGGGCCTTGCACTCCACTCCCTGTCCTGCTTGGAAACGAGTTCAGTCGGGAGCCAACGGGTGCCTGAAGCCCGAGTACGATGCGGTGGTGATAGGAGCAG
Seq A exon
GACACAATGGGCTGGTGGCA
Seq C2 exon
GCAGCGTACCTCCAGAGACTAGGGGTGAACACCGCGGTCTTCGAGAGGCGCCACGTGATTGGGGGTGCAGCTGTCACTGAGGAGATCATTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807-'1-7,'1-2,4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=9.3)
A:
PF134501=NAD_binding_8=FE(9.4=100)
C2:
PF134501=NAD_binding_8=FE(48.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGAGTTCAGTCGGGAGC
R:
CGGTGTTCACCCCTAGTCTCT
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]