HsaEX0051437 @ hg19
Exon Skipping
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:23517]
Coordinates
chr10:100167661-100174941:-
Coord C1 exon
chr10:100174766-100174941
Coord A exon
chr10:100170696-100170715
Coord C2 exon
chr10:100167661-100167754
Length
20 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCGTTTTGTTGCAGGAC
3' ss Score
11.75
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CCAATCGCTAGCAAACTCCCTGCCTAGCAAGGCCCAGCCTGGGGCAGAAATGGCTGCAAGTGGCCGAGGTCTCTGCAAGGCTGTGGCCGCCTCTCCCTTCCCGGCGTGGAGACGAGATAACACGGAAGCCAGGGGAGGTCTGAAGCCTGAGTATGATGCGGTGGTGATAGGAGCAG
Seq A exon
GACACAACGGACTGGTGGCT
Seq C2 exon
GCAGCGTACCTGCAGAGACTGGGGGTGAACACCGCCGTCTTCGAGAGGCGCCATGTGATCGGGGGTGCAGCTGTCACTGAGGAGATCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943-'0-6,'0-3,5-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.160 C2=0.106
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=9.3)
A:
PF134501=NAD_binding_8=FE(9.4=100)
C2:
PF134501=NAD_binding_8=FE(48.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGTATGATGCGGTGGTG
R:
ATCTCCTCAGTGACAGCTGCA
Band lengths:
117-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)