DreEX0060658 @ danRer10
Exon Skipping
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:32916396-32921220:-
Coord C1 exon
chr8:32921172-32921220
Coord A exon
chr8:32920988-32921068
Coord C2 exon
chr8:32916396-32916501
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCTGATTGCTTTCAGAGG
3' ss Score
8.41
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCAGTAGAGAGAGCTCTTTTAGTGATGAATTATCAAGTACTGTTGAGAG
Seq A exon
AGGCCGAATGTATGCAACACTTGGCCCAAATTGGCGTGTCCCAATATGTAACTCTCCTAGAAGTAGAAGCTACATTTATAG
Seq C2 exon
CACCCCTGGGGCTGTATCCAGCTATGAATGCAGTACTCTCAGCAGTATAACCATTGAAGGGCCACTGCGGAGAAAGACACTAATGAAGGAGGGTAAAAAACCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(17.0=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]