MmuEX6100692 @ mm9
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33000918-33010859:-
Coord C1 exon
chr2:33010808-33010859
Coord A exon
chr2:33002090-33002173
Coord C2 exon
chr2:33000918-33001023
Length
84 bp
Sequences
Splice sites
3' ss Seq
TAACTCCCTTTCCTCTGAAGCAG
3' ss Score
5.64
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
GCAGTAGTGAGAGCTCAGAGTTTAGTGAAGAAATGTCTGCAGGGCTGGAAAG
Seq A exon
CAGGGGACGTCTTTATGCCACGCTGGGACCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
Seq C2 exon
CCCCACGAGCCCTTGCACCTGTACTGTGGGAAGCTCAGCCACTGTGCCCACTATGGAGGGGCCTCTGAGACGGAAAACCCTGCTCAAGGAAGGCCGGAAGCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831-'19-19,'19-17,20-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.528 A=0.287 C2=0.489
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(17.0=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAGTGAGAGCTCAGAGT
R:
CTTCCGGCCTTCCTTGAGC
Band lengths:
152-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: