GgaEX0000925 @ galGal3
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11084648-11085433:+
Coord C1 exon
chr17:11084648-11084699
Coord A exon
chr17:11084988-11085068
Coord C2 exon
chr17:11085328-11085433
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATATTTACATGTGCAAACAGGGG
3' ss Score
6.06
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATAGCAGTGAAAGCTCGGAATTTAGTGAGGAGCAGTCATCAGGGCTTGAAAG
Seq A exon
GGGTCGTTTGTATGCCACGCTGGGGCCAAATTGGAGGGTACCAATCCGGAATTCTCCCAGGAGTCGAAGCTGTGTCTACAG
Seq C2 exon
CCCAACAGGAGCCTGCAGCTGCACACTAGGTAGTTCCATGGGAGTAGTTACCATGGAAGGACCCTTAAGAAGAAAAACATTGCTCAAAGAAGGCAAGAAACCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(17.0=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTGAAAGCTCGGAATTT
R:
AGGTTTCTTGCCTTCTTTGAGCA
Band lengths:
153-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]