RnoEX6016515 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12190594-12200118:-
Coord C1 exon
chr3:12200067-12200118
Coord A exon
chr3:12191723-12191806
Coord C2 exon
chr3:12190594-12190699
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTACTCCCTTTCCTCTGAAGCAG
3' ss Score
5.99
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
GCAGTAGTGAGAGCTCAGAGTTTAGTGAAGAAATGTCTGCAGGGCTGGAAAG
Seq A exon
CAGGGGACGTCTTTATGCCACGCTGGGGCCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
Seq C2 exon
CCCCACGAGCCCTTGCACCTGTACTGTGGGAAGCTCAGCCACTGTGCCCACTATGGAGGGGCCTCTGAGACGGAAAACCCTGCTCAAGGAAGGCCGGAAGCCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910-'32-32,'32-30,34-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.172 C2=0.528
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(17.0=52.8)
Main Skipping Isoform:
ENSRNOT00000022755fB12092
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAGTGAGAGCTCAGAGT
R:
CTTCCGGCCTTCCTTGAGC
Band lengths:
152-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]