MmuEX6100692 @ mm10
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33140995-33159036:-
Coord C1 exon
chr2:33158910-33159036
Coord A exon
chr2:33146570-33146653
Coord C2 exon
chr2:33140995-33141086
Length
84 bp
Sequences
Splice sites
3' ss Seq
TAACTCCCTTTCCTCTGAAGCAG
3' ss Score
5.64
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
GCCCCTCTGCCGGCTCCAGCTCAGCCAGGTTCCGCCGGAGGCCCACCTGTCCAGATACATCTGTGGCCGGCAGCCTCCCCACACCGCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAA
Seq A exon
CAGGGGACGTCTTTATGCCACGCTGGGACCTAACTGGCGGGTTCCAGTTCGGAATTCTCCCAGAACTCGGAGCTGTGTCTACAG
Seq C2 exon
GCAATGTTTACAAGTTCCAGACGGGCTCCCGTTTCCATGCGATACTGTGGCACAAGCATTTGGATGATGCATGTAAAAGCAGCAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831_MULTIEX1-6/10=3-10
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=0.181 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PD(22.3=80.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCACCTGTCCAGATACAT
R:
CTGAGGCCTGCTGCTTTTACA
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types