DreEX0004431 @ danRer10
Exon Skipping
Gene
ENSDARG00000102152 | FO834898.1
Description
NA
Coordinates
chr5:4256192-4269271:-
Coord C1 exon
chr5:4269223-4269271
Coord A exon
chr5:4264904-4264984
Coord C2 exon
chr5:4256192-4256288
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGAACTCACTGTGCGAACAGGGG
3' ss Score
4.89
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GCAGCAGTCAGAGTTCATTCTGTGATGATCTTTCTCCAGGAGTCGAGAG
Seq A exon
GGGCCGCATGTACGCCACTCTGGGCCCCAACTGGAGGGCTCCTGTACGCAATTCCCCCAGAGGCCGCGGCCGGGCCCTCAG
Seq C2 exon
TCCGTCAGTTACGGAGGTCACTGGAGACGCCAGTTTGTTCACGATGCAGGGGGCAATCAGGAGGAAAACCATGATGAAGGAGGGCAGGAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102152_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.714 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(17.0=57.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGTCAGAGTTCATTCTGT
R:
GGGTTTCCTGCCCTCCTTCAT
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]