DreEX0060985 @ danRer10
Exon Skipping
Gene
ENSDARG00000036257 | rasal2
Description
RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
Coordinates
chr2:35864003-35869204:+
Coord C1 exon
chr2:35864003-35864090
Coord A exon
chr2:35864299-35864329
Coord C2 exon
chr2:35868054-35869204
Length
31 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCTACTGAATTTCAGGTC
3' ss Score
8.89
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCTGATGGCCGTGGAGGAAGAGCTGAAGAGAGACCATGCAGAGATGCAGGCAGTCATAGATGCCAAACAGAAGATAATCGATGCACAG
Seq A exon
GTCGCTAATGGAACTGAGGTAATACCAGCAG
Seq C2 exon
GAGAAGAGGATCAGCTCTCTGGATGCTGCTAACTCTCGGCTGATGAGCGCTCTGACTCAGGTGAAGGAGCGCTACAGCATGCACAACCTCCGGAACGGCCTGTCACCCACCAACCCCACCAAACTCTCCATCACAGAGAACGGGGAGTTCAAGAATAGCAGCTGCTGATCCAGGCTACATGCCTCAACTGACTGACTCTGACTACTGTAAACACACGCCATCGCAACGAATGTCTGCTTACCGATGTATATAAATGTTATCTAATATTGGTTATGTACAGAAATGCTACTGCAGGGGGGGGGGGGGGGTGTTTTGAAGTGGGAGAGTTAAGCATAGCGCCAGTTCTGAGTCAGTGAGATTGTGTTTGTTTGTTTTTTTAAATACTGATTAACTCGTAAATGCAGATTTCAGATTTTTAATTATTGCCTAAGATATATGAAGGAGATGTACATATATTAAAATAGAGTTGTTTTAAAAGAAAATATGAAGAAAAGCACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036257_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.455 C2=0.460
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.4=100)
A:
PF120043=DUF3498=PD(1.2=54.5)
C2:
PF120043=DUF3498=PD(4.5=42.9)
Main Inclusion Isoform:
ENSDART00000113489fB5136
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGAGGAAGAGCTGAAGA
R:
GCTCATCAGCCGAGAGTTAGC
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]