GgaEX0005778 @ galGal4
Exon Skipping
Gene
ENSGALG00000004323 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr8:6430857-6435228:-
Coord C1 exon
chr8:6435141-6435228
Coord A exon
chr8:6433749-6433779
Coord C2 exon
chr8:6430857-6431755
Length
31 bp
Sequences
Splice sites
3' ss Seq
TTCGCTGTGTTGAATTACAGGTC
3' ss Score
8.24
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCTCATGGCAGTTGAAGAGGAACTGAAGAAAGATCATGCAGAGATGCAAGCTGTCATCGATGCAAAGCAGAAAATTATTGATGCACAG
Seq A exon
GTCATTAATGGGAATGAGATAATTCAAACAG
Seq C2 exon
GAGAAGCGGATCGTGTCCCTGGACTCTGCCAACACGCGGCTGATGAGTGCCCTGACGCAGGTGAAGGAGCGCTACAGCATGCAAGTCCGCAATGGCATCTCCCCCACCAACCCCACCAAGCTTTCCATCACGGAGAATGGTGAATTCAAAAACAGCAGCTGCTAACTGGGCAGACGCTGCCGGCCATCTTCCCAGGAGAAGGGCAGGAGGGAGCGGACTGCAGAAACCCCACCGACGGCCCCCCTTCCCCGCCAGGTTTACATGTTGCTGCTAATAAAAAGGAAACAAGAGAGAACTCTGAACGGTGGGCTTTAATTCCCCACTCGAGGCCAGGAGAATCGGGCTCCCGAGAACAAGTCCTTCCATATCGCTGTGTAAATAGAGGGAGCTCTGGGCCATGTACAGAAGACGCCGATGTAATATACCAAAAGGAAGTGAATACTGTAGATTTTTTTTAATTATTGCTATTTTTATTATGTTTTTTTTTCCTCTCGTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.182 C2=0.723
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(6.0=100)
A:
PF120043=DUF3498=PD(1.7=72.7)
C2:
PF120043=DUF3498=PD(5.0=43.6)
Main Inclusion Isoform:
ENSGALT00000006891fB625
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAAGCTGTCATCGATGCA
R:
CATGCTGTAGCGCTCCTTCAC
Band lengths:
126-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]