GgaINT0038841 @ galGal4
Intron Retention
Gene
ENSGALG00000004323 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr8:6430857-6435228:-
Coord C1 exon
chr8:6435141-6435228
Coord A exon
chr8:6431756-6435140
Coord C2 exon
chr8:6430857-6431755
Length
3385 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGTGGGCTGTCTGTTGCAGGAG
3' ss Score
9.85
Exon sequences
Seq C1 exon
GCTCATGGCAGTTGAAGAGGAACTGAAGAAAGATCATGCAGAGATGCAAGCTGTCATCGATGCAAAGCAGAAAATTATTGATGCACAG
Seq A exon
GTAAGGAGCTCAGGATGCCCAAGAGCTAAGTGTTCTGTGCATAGAACCCATTATTTTCTCCTATCGTCTTGCCCCAGCGTTGTTATCTAGCTCCCAAGCCAGTATTGGCTCATGGTGTTGCCCATGTGACCTACTGCCTTCTAGGAGAGCTGTGTTTTTTAATTAATGCAGACTGCACTGTCTGACACTGGCTTTTGAGAAAGCTGGCAACAAATCACAGGACTGACTGCTTTCTCCACAATCTTTTCTGCTTTATGAGATCCCGGGGGGCAATGGAATAGTGGTGCATTGTGTAGACATCATTCCAAGTGTGGGCCTGGGAACTCTGGAGAAGCTGTGCTTCATACCAGCATAGTTGGATTGCCATGTGCATGCATCTCGGCTATGCAAGCTAAAAGCACGGCTTTGAACGTTCCTGTGAAGACAAGAGAATGCTTGCCATGGAGCATTGCCCAACGTAACCCCATATGTGGCATTTCACCCCATCCGACTGTCTGCGTCAGTCTTGGAGAAATGCCCCCTCTGCCACAGAGTGCAGTGCTTGTCTCAGTCGACACGAGTTAGCTTTGGGAAGCGGGGCCTCGTGGGCAATGCATGTGGGTGTATCGTGTGGGATCATTTCAGCTTTTCTGCTGTGTCTGTGCTGATCCCAGAGAGCAAAGCTTGTCCAACAGAACCCGAGGCTGGTTTGGTATCTGCCTGCCACGTTGTGTTTGGAGGATGTCTTTCCTGCTCCTGGGTTTTTCAACTATAAGTTTATGAACAGATAGCCTTTCAAAATTGCCTTATTTCAGGAATAACCCCGATTGTTGCAGGAAGTCGTTTCCCTCACGTGAATGCTTTTAAAGCTAGATTCAGAACAGGCCCACCAGAGGAGCCCACGTGTTTGCTGAGGAGCGTAGCAATCCATCTAAGTCACATCTGGAAGATTTTTTTCTTAGTCTGTGATTCCCCTGGCACAGGGATCCAGCAGGGATTAGACAAGAAGAGTTCTCTATCATGCGGTTTGTGGAATGGAGTTGGGACCTGGCTTATCCCATCCGTTTGAAGAGAGGTTGCTGCAGGGAAACCTGGGTTTCTTGTGCTTAATTGGCCACGAGATGCCTGTCAGGATTTGCTCTTCAGCCTTGCGTTCAGGTGCAGCACCCGACACAACCCAAAGCACAAGGACAGCCCTGTCCTCAGCACTGTTCACACCAGCTCTGGGCAGTGCCTGCTGTGCACAGCGGTGCCTGAGGCCCTCCAGGCTGACTGAGAGCCCCCACTGAGCAGGGGAGGTCTGGCAGCACTCTCCTTGGAGCTGCAAAGGGTACTAGCCCAGTTGCTATTGCAAGTGACATCTTCGCTGTGTTGAATTACAGGTCATTAATGGGAATGAGATAATTCAAACAGGCAAGTAAACCCAATCAGTTCTCTAGCTGAGCAGCACCCAGTCCTGGCCCGGTGCACTGACCTCCTACCCATTCCAGCTCCTCCCACTCCCTGTGCCCAATTCCTGCATGTTAGATGTGTTGGAGAGGTCGTGTTTTCCTTTGGGTGAGAGGACGCCTCTACTCACCGAGCTCATTTCCCAGGCGTAGGTTGCCAGCAGCCTGCAGACTGTACAGAGAGCACTCACCAGTGCCAGAAAATCACCAGCCTTTCACTTTTAACAATCTGTAAAGACACTCCTGGGGAAGAAATTTTAGTTTTGAAGTACATATTCCAGGTGCTTACTGGAATATATACATATTGGAAATTTAGTCCGAGGAGGAGGAGCTTTAACTTGCTGAAGAGCACATGGCTGCAAAGGCAGTTGGTTCTTTCACCATTCAGACCACAATTCAGGATTTATTTTGGCATGGGGGAAAGGTTAAGGCCTTCATCTCCTCCATGGCCATTGCTCCCAGCTCGGGCAGCAGCGTGGTGCTGGGGTGGGCTGCAGCCTGCCTTCCTGTGTGTTGCCTTCTGCCTCCTCCATTTGCTCTGCAGCGCAGAGATTGGTCTCTGCAGGGCTGCGGTGTAAGCAGCAGTTACATCCTGCTTTGTTTTTGCACCCAACCATTTCCCCCTGTGGGGAGGCCCCTTGAGAAAAGCAGGCACGATTACAGCAGTGCCGCGCAGCCACTGTGCTGGGATGGGAATGCCAAGGGGCTGTCTGTAGCACCCACGTCTCCTCATTGCCTGAACCGTCCCGTAATGTTTGTGCCTCCTGTACATCATTTTCCGTCCATTTTGTTTCTCAGCAGGCTGGACAGAGAAGAGTTCCTACACGCTACTTTTTTCATTCGAGTAAGCTGGTCATTTTTCCTCCTCAGAGTGAGAAGCACAGTCAGCTGATAGCATGGAGAGCGTGTGGGCCTGCTGCCATCTCTGTGGCTGCATTTCTTAAGTTATTTTTTTGGAAAAGATGAGAACTGCCGTTTCTAATCGCACCAGCAGCTCTTTAGCTTGACCCTTCAGTGCTGTATCCCACTGCATATAATCTAGTTGTTACGAGGCTGGGTTTTGCTGATGGCTTCTTAAGGTTTCTTATGATAAATTCACCACGTGTCCTTTAGATCTGCGACTTCTCTTGCTAAAAGTGGAGGCTGGAAGAACCAAAACTGGGCTGTGGGAACCCAGGATTGAGTAGAGCCCGGGAGCCGCTCCGAGCTGGAATGGGTCTAGGAGCAGTGTGTGTTCAGTGTTTGTTCTTTGTGTTCTGTCCATGGCATCTCCCCCTCCACCCACACTGCCCTCTTTCTCCTTCACCTCAAGTAACCCCTTAGTTGTAGCTTTTGGCTGCTTCTCTGTGTTGCTGCTGCACCCTCACTCCTGCTGATGACTGCAGGCTGCCATCATTTGCTTTTTTTTCTTTTCCTCCCATTTAATTTCCAACATACCATCGGTTTATTCTGAGCACACTCCATCCCAAATACGGAGACGATGGCCATTAGATACCACCTGCACTTTTCTCTGCCAGATGAAACCACCACTTTTGTTTTCTGCTGCCTGTTTCTGTTTTTTCTAACACGTTAAGAGGAAATATTGGCTATTGTTATTAACGCCAGCACCCGTGCCCCCCTCCTCCCCCTTCCATGGCAAAACGCTGCATTTCCATCTGCCTCGGCTGGAGGCTGTCTGGAGAGAGCTCACCACGTAACTCCGACTCACCATCACCTCCATCACGCCAAAGGCCAGGAGGGCCCGACGGGCACAGCCCACGAGGCCGCGCCACCCCAAGAAAACAGAAAGAGGCAGACATCCCATCGTACCACAGAATGTTAGCTGAGCTGCCTCGGCCTAGAAATCATCTGGAGGTGTTGTCTCGGCCCCGGGTCCTGGCAGTGCCCGTAACGCAGGTTGTGGGGCAAAGGCGGTTCGTTTGTGAAGGAGCTCTGACGCTGTGGGCTGTCTGTTGCAG
Seq C2 exon
GAGAAGCGGATCGTGTCCCTGGACTCTGCCAACACGCGGCTGATGAGTGCCCTGACGCAGGTGAAGGAGCGCTACAGCATGCAAGTCCGCAATGGCATCTCCCCCACCAACCCCACCAAGCTTTCCATCACGGAGAATGGTGAATTCAAAAACAGCAGCTGCTAACTGGGCAGACGCTGCCGGCCATCTTCCCAGGAGAAGGGCAGGAGGGAGCGGACTGCAGAAACCCCACCGACGGCCCCCCTTCCCCGCCAGGTTTACATGTTGCTGCTAATAAAAAGGAAACAAGAGAGAACTCTGAACGGTGGGCTTTAATTCCCCACTCGAGGCCAGGAGAATCGGGCTCCCGAGAACAAGTCCTTCCATATCGCTGTGTAAATAGAGGGAGCTCTGGGCCATGTACAGAAGACGCCGATGTAATATACCAAAAGGAAGTGAATACTGTAGATTTTTTTTAATTATTGCTATTTTTATTATGTTTTTTTTTCCTCTCGTTGAAAGCACTGCAGTCCTTGGAGAAGGAAGAGGGGAGTGTGAGTGCATGTGTGTTGTGGGTGAGAGAGCTGAGCTGTGGGTTACATTAGATAGCAGCTGTATATATCAGGCTGACCGATGCAAGTGCACGAGTGGAGTGAAATAGCAGCGAAATGAACTCTGTAACAAAACTCATCTGCTGATTTTATCCCTCTCTTCTCTACTTGTCCTTTATCCGAATGCCAACTCAATAGCAAACGTTTTAGCAAGACAATTAGCTCTTGCTGGCTCCTGTACCTGCCTCTGGTGGGATTCCAGCAAAATTCTGAGCAAGGTAGAATGTTGGAGCAGTGATCTTGTCTCCTTGCATTTGCACCCAGTCGAGCTTCCCAGCAAACAGACAGAGGGAATCTGCAGTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323:ENSGALT00000006891:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.723
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(6.0=100)
A:
NA
C2:
PF120043=DUF3498=PD(5.0=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]