BtaINT0122620 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61308523-61314123:+
Coord C1 exon
chr16:61308523-61308610
Coord A exon
chr16:61308611-61313958
Coord C2 exon
chr16:61313959-61314123
Length
5348 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCCCGTTTGGTGTGTTGTAGGAA
3' ss Score
10.03
Exon sequences
Seq C1 exon
GCTAATGGCTGTGGAAGAGGAACTGAAGAAGGATCATGCTGAGATGCAGGCAGTTATTGATGCAAAGCAAAAAATAATCGATGCACAG
Seq A exon
GTAAGCAGGTTCTCAGTCTAGTGGAAGCGACTGGTTTATCATAACTGTTATCTCCCAACTTCCCATCCCTTGCAAACACCAAGGCACATAACAGAAAATGGCTCATTGGAAAGTTCTCGGCATTACCTTTCAAAGACTTTTTTAAAATGTTTCTTTGCGACCTCTACGACCTTTTCCTTCCTTTACTGGTGACGAATCCATTAACCCAGCAAAGTTTTAGCCTGCTTTAGTACAGGTGCTCGACAAATCTCAACCGGGTGCATGACGGGGTTTACTTCTTTCCTTCTGGAAAGGAGGGCATTCTCTCGGGGGCACCTGTGAAAAGTCCACTGCATGTGTCTGGCTTGTGACCTCCACTGACCATTGCTTGGCTGTGACGTTCACGGTCTCGTCAGTCACGTCCACTGTGCCATCAGCCTCTGGCCCCAAACAGTAGTTGAGCTTCAGGGGAAAGACAGGGCTGCAGAAGGCACCCTGCCTTGTTATTCTTTTGGTTCCGTGACAGGCATCGGTGCCTGGGGTTCACTTGGCCGCCCTTCTCCATTGGTGCTGTGCTTGGAGAGCCTCTTACAGTTGATGAGATCAGAACCTGGGTGTCTGCTCCCTGTAGCTTCTACCTGTGATGCTAACGACACAATGATGGCCAGGGGCTCCTCACAGGTTCTCAGAGCAAAACCCAGGAAGTGTTTCTAATGCCTTTTCATCTTTTCAGTGCAAAACACGGTTGTATTTCTTAGAGTGAAACAAGTAACGAGAGGCAAGTGCCGTTTGGATGTGGCTGGTTTGGCCACTGAATATATCCCCTCCCTAAAGACCACCCAGGCAGGCTTGTGTTTCTCACCCTTAAGTATCATCTCACCGTTAGGTCTGAAATAAAAATGGGAGCAAGGCCTTTGTATGTCCCACTTTCTCCTCTCCCTCTCAGCCAGTATCAGTCTATGGTAGAACCACCCAGTATTCTTAAACACACATTCCATTCCCACTCAGGTTTCCTGACAGAGCTAATGTGGGATGGGGTACATTTTTCAAAGGAATAGGGAGCGAGGCTGAAAGCACCGCCGTGGAAAGTATGCGTCCTGGGCCTCGTCCTCCCTCATACACACGAGACCCGGAAGTCAAGTGCGAGTGCCAGTGCTCTCTTGTCAGCACAGTTCCCAGAAAGATTTGGACCCTTGAACTCTAGTTTCCAGATATTTAGACCTCTTAAGAATCAGAAGAAAGTTCTTAGTTGGTCCTTTCTTTAAATGTGTCCCCAGGGTGGATGACAGAGAAGGAAGGGTTGCAGAGACAAGGCTATCTCGACAGGCATTTATCCAAGAGGCTTAAGAGAAACAGCCTGGGTAAAGACAGTTTAGTCAGGAAAACTAGTATTGCTAAGTGTTCACTTTGGGATTTTTCAACATGAGAGAGAGTTCTATGAATAACTATACCCAAATAGATTTTCATTCTAATAAGATAATACAGATTGTTTTAATAATTTCCGCTGGTCTAAAACCGTGGCAGCCTTAGCAAAGGGAGCTTAGGGGTGTCCCACTCATGGCTGTATGCATACAGTCCGATTTCCTAGTTGCCTGTTGAGGCAGCCTCATCATTAGCTTCTGAAGATTTCTATCCTACCTTGTCCCCGATTTTGACTTCTAGGTAAGATGGCTGGACATGAAGCAGGAGTCATAGGCATAGCAGGTGAAGGCAAAGGAGGGAAACAGATTCATCAGGGCTCAAAAGCTCTGGAAAGAAAGGGCCTTCTCTCAGTTAACAGGACGGTGTCACCATTCCAGAATGGGAGAACTGTTATCCTCAAAGCACTGGTCAATGTCAGACTTGCAGTCTGGCTAAACTAGACAATAGTTTGGATCCATACCTCAAGGCAATGGTTTTCAAATGGTTTGATTCTATGGACTATTTTGGTGGAACCAGAGGCACCTTCCATAGATCTCTTTCCAGCTGCTCCTCCTGACCACTCAACAACAAGGACTTCTGTCAGCTAATGGATCAAATCACGTCCAGGTTAGCTAAATATCATAAATTACACATTCAAACACAGGCATTACTGTATAGTATATTTTAAGAGGAGGCTCATTTTGGATCCCTAAAGCATACCTGAGGAGTCCATTAGACCACATTTTGAAAACCATCGCATGATGCCCAGCACAGATGATAAACACTAAAGCTAGCTTTTCAAAAATTATAATCCCCTTAAAAGGAAGGGGGTTCCCAATTCCAGCTGCTGTCTCACTGACACATTAAAAATCCTTTTCTAGCAAAAGACTGTGAAAATCCTTTGGTGTCCTTTGTAGCAAATGCCTCTTCCTCTGAAAGATTAAGTAACTTAACATCTTAAGTGTTTGATGGAGCAGAGCAACCCTTCCAGCAACATTTGCTAGAATGAGGACATGTTTTGGGGTGAAAGCTTCCCAGCGAGGTAATGCACGCTTACTTCCATGCCCCTGATACCTGCCTTGGTGCCACTGGCAGTTAAAAATATTTCTGAAGTGAATTGCTTTCCTTATACTAGCATCGGGCCCAACACTTCCCAAAACAGGACAGGACAAGTACCCAGTGAATGGGTTTCCATCTCTCTCAGCAGCCATGTGCCCCTCCAGACCAGGCTTGTCCCTGAATTCAGCCTCTTCATCTCCTAGAGTCAGTTCATGCTCCGCAGCCCCCCTGGGGTCAGCCACTTTCTAACTGGAACTGGGAGATGATGAGTATTCCCCTAGTGACCCTGTCCTAGGAGATGAGATCCTGGTGATGGTACTAAGGGGTCATTTCTTAAACATCAGACCAGGGGCTGTGCTGCCTTCCACCCCAACCTCCCCCCTGCTCCAGGGATCTCTCCAGGTGACTCAAATGGAGAACAGAAAAGGGCGTCCTAGGAGAAGCGAGCAGCTGCCTAGTTACTGTTGCAAGTGATATCTCCACTGTGTTAAATTACAGGTCATAAATGGAGATGAGATTATGCAAACAGGCAAGTAACCCCGTCCGTCCGTTCTCTAGCTGAGCAGTTCCCAGCCCTGGCCCGATGCACTGGCCTCCTACACATTCCAGCTCCTGCACTCCCCACACTCAAAGCCCTTCCTGTCAGGCCGGAACTAGATTGCTCTGCCGTTCACGCCAGGCAGAATGAAAATGTCAAGGCATCTTTTGCCAACTGAACTTGACTTTCAAAAGTCCCTGTTTGATTTTTTTGTTTGTTTGTTTTATTTTGAAAGGTTGGCACTTGGAGGGGAAGTTACAAAAGGGAGTTTGTCCACTTGGAAGTTTTCAACTGTTGAATAAAAGGGTTGCTTGACTTTAGTTGTTACTCTTGCAGGAAATAAATAAATACAGCCATTCTTAGCCTTCTTTTTGACCCTTTATGAGTCAAATAATTTTTCATGAATGCCTAATTTCTTTGGGTCAACCCTAGAGAATCCTTTAGTCCTTAGAACTGAGACATTATAATTTATCCTAATACTGAAATACCTTCTTTTTTAATCATTTGAGATATTACCAGTCTTTCTGCTCAGAGATCATTTCTAACCATAGTAGCGGGGAACATCATATCTGGTTCCCACCCCCTTTTCCCTGGTAGTCACCGGCCAACCCTTACTTCCTGACTTTTAAAAGATCTAAACTTGTTACCTCAGTAAACTCCATTGGCAGTAATTTTTTTTAAAATTATTATCTTTTTTAAAGCCTTGTAGTTCTTTATTTCTTTCAAGTTTTGCTTATCCTTAAAACAAGTTACCTTCCTAGAGTATAAATCTTATGCTAGATTTGTGGTTAATTAATAATGCTGATTTTTATATATATATGTATCTTACCCCCTGAGTTCTCTATCAGGGAAAGGAAAAAAAATTTAATGATATTAACAAGTGTGAGCTAGTTTTTTTTCATACTTTTGAAACTGATCACCAGCCCTGCTCCATATAGATTCCCACCCCACCCCCAAAAGCAGAAGATTAAAGGGAAGCCTTACCTGATGCTACTGTTGTATTGGGTTGGCCATAAAGTTCATTCAAGTTTGTGTACGCTGTTACCGAATGAATTTTTTGGCCAACCCAATATATGCTTTCTCCCTAAACGTCCCCCCAGGGCAGTGGTCTTCCTTCTGCATCTTGGGCAGCATGTTTCCCAGCAGAGCAGCGCTGCTCACAGCCGTGTGGAGCTACTCCCGTAACAGCAAGGAATAGCATCCATCACATGGACGTTTGTGTGTCCTCTCTAACCCTGACCATGACTCTCCTTACCATGCTTTTCCCTGAGCAGATGAAAACAATCCCTGGGTAGGAAACCTGTTTTTGGCTCTGGGGGGTTGTTCCTCACGTGTTTTTTTTTTTTTAATTGTTTTCTGGAAAATGGCAACTTCATGTTGGAAAGGTTCTAGAATGATTTACCTAGCTACTGAAGCTAAGATTAGGATTTCTCTCCTAGTCTTTGCAAAACTAATGATATTTTGATGGGATGATTTTTATTTTTATTTTTTAATTTAGATGAGTCTGCTTTTCTCTGATTGCCATTTTGTTCCTTCATTTTTTTTTCTCTTTTTTTTAATTCATGTATTCAACAGTGTTTGGTTCCAAGATGTTGGTTCTAAGGCTTTTTTTTTTTTTTTTTTTTTCCTTTCTGAGATTCAAAAGTAAAATGAAAGCAGTCTTCCTTATTGGGGAGCTCTCCTGGAGTACCTCTGAGCTGGAATGAGTCTAGGAGCTTGTGTTTTCTGTTTGTTTCCATGTGTTATGTTTCCGGCATCCCCCTCCGGCCACATCTCCCTTCCCACATTCAAATAACCCCTCGGTCTAGCTTTTGGCTGCTCCTCCTCCTCTCGCTGTCGCATCCTCACTTTGTCGGTGACTATAAACTGCCGCCATGTACTGTTTCAGTTTTGAGCACCACGTGAAATCTTTCCACATGTGACCGGTGTGCCCCTTTGGGGGCTGAGAACCCATAGATCACATGCACTTCTCCTCTGTGAAATGAAACCTCTGGTGCTTCTTTCTTTGCCACCTAATTCCTGTGTTTAAGTTTTGACCCAAAGCACTTACTACAGCAAAGCAGCTTGACACCTCTGTCTCATAGTCTGAATAACACATGGTGTCATTTTTATGTGACGTCTTAGGGTCCCAAGGGGTGATGAGTAACAAACCCTGCAATGCTGAAGGGGAAAAAGAAACACAAACCCACTGGGCCCAGGGGAAGCTGGCCTGACTCGGGTGCAGAAAGAGGCAGAGACGTTCCATTTGTCTGGGAAGCATCATGTGCACTGCTGTTTGATAGAAAGCATTAATTAGAACAGTCATTTGATAGAGCATTACGGCGAGTTGCCCACATGGAGCCATAATAAAGCCCCGTTTGGTGTGTTGTAG
Seq C2 exon
GAAAAACGGATCGTGTCGCTGGATTCGGCCAACACCAGACTGATGAGTGCGCTGACCCAGGTGAAGGAACGGTACAGCATGCAGGTCCGAAATGGCATCTCCCCCACCAACCCCACCAAGCTTTCCATCACGGAGAATGGTGAATTCAAAAACAGCAGCTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537:ENSBTAT00000020658:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.743
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.8=100)
A:
NA
C2:
PF120043=DUF3498=PD(4.8=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development