RnoINT0124502 @ rn6
Intron Retention
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74771522-74777726:-
Coord C1 exon
chr13:74777639-74777726
Coord A exon
chr13:74772378-74777638
Coord C2 exon
chr13:74771522-74772377
Length
5261 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCATGATTGGTGTGTTGTAGGAA
3' ss Score
7.46
Exon sequences
Seq C1 exon
GCTAATGGCTGTGGAAGAGGAGTTAAAGAAGGACCACGCTGAGATGCAGGCAGTTATTGATGCAAAGCAGAAGATAATTGACGCACAG
Seq A exon
GTGAGCAGACCTGAGGTCGGTAGGGAGCACTTGCTTTAATTGACTTTCTGACTTCCCACCCTGGCAAATGGCAAGTTAGTAGAAAACAATATACTGGAAGTTTCTTGCCGTTATCCTTTGAATATCACATGAGTTTCCATATGAGCTCCACGTTGATATAGCATTAATGTGAGTGTAAATAAAGTACTGTGTATTTAGTGTAGTTGTTTGACAAGCCTTAGTGCAGTACATGATGAGGCTGGTTTCCTTCTTGAGGAAAGGAGGACATTCCCTAAGAAGGTAACTGTGGGAAAGTGTCCTGCATGTGACCTCCACTAACCATTGCTTGGCTGTGTTCTGCACGGTCTTGTCAGTCATGTCCATGGCCGTCGACACCTAGTCACAGCAAAGGAATGGTAGAGGAAAGATACGGTTATAGAAGATGGCTTTCCTTGTTATCCTTTGGTTCAGGGTTTGGTATTGCTGCTTGGAATGTGCTTGGCTGCCCTTCTGTGTTGATGCTAGGCTTAGAGAACCTCTAGATAAAACTTGATTTTTAAAAAAAATTGATAAAATTAGAACCTAGGTTTCTGTTGATGATAGCTTACACCTAGGAGTATGATGGTCTCCAAGAGCCAGCCCTTCACAAGGTCGTACTCCAGTCATCAGAGCAAAATCTAGGATGTATGAAATATTTCCCATTCCTTGTTGCTTTACCACTGTAGAGTATGATTTACTTCTTATATGGACATAAGTTGCAAAGGCAATTACAGTTTTGATACAGTGGTCCATCTAACTACATTGAGTGTTTCGCCTCTCTGGGCACAGACTAGCTGAGTTTGCATTTGTCCTCTTTATGCTGTGACATAATAATGAGCACATTCTATGTCTTAGTATCTACGAGAGCCCCCAGTACTCTTACACAGCATTTCAACAAGCAAGTTTACTCATGAGCTCAGTGTAAAATGGGGTTTATTTGTCAAACTGGGAGCAGAGCCATGGGAAGGATGCTTCCCAGGCTTCGTCTGTCTTGAAGCGCACTAGACTTAGAAACTGGTTGTGGGTTGTGGTGCTTTCTTACACACGTAGCTCCCAAAATGTTTGAGATTCACATTCTGGATATTTTGACCTCTTTTGAGCCAGAGAAATATATGCTATAATTACTTTTCTTGCCCTTCTTACTCTTTTATTCTTTCGAGGGTAAAGTTACTTCCAAGGTAAGTTAGGGGAAAATAGTAGAAACAATATATAGCCATCTTGCTATATTATCATATTCTAAAAAATCACTCCTTAAGCTTAAATAAAGATAAAGATGGTAGATAAAGATGGTGATTTCCTCAAGAAAACTAGTGCTGAAAAGTTCCCCCTTCAGATTCTCAGTGTAACAGTGTGACGCACGCAGGGTGAGCCTCATTAGTAATCACACGGAGATCTCAGTGCTGAAATAGAACAGATGTCAGCCACTGTAATGCAGTCAGTCTTCAGCAGAGGGAACGTGCCAGCCGCACAGTATGGCTCCATGTATGCTAGCTGACAGGACAGCGCCACCACTAGTTTCTAGGGAGCTTCCTCTCTACCTGTCCCCAGTTTTGATCTAAGAATAAAGCAGAAGCTGTGGTCAATAAAGATGAAGTCCAGGAAGGGAATTTGATTGACCAGGAGTCAAAAGCTCTCAGAGGTGGAAGCAATGGTATCCTCAGAGCTCTCAGTCAGATTTATGGTCTGGCTGATGGCAGTTTGATTTTCCGATGGCTTGGTTCTCTGGACTGTTTCCATTGAACCAAGGCAGTTTCCATAAACCAATGCTCTCACTGACTATGCAACCATGAAGACCACTCTTAACTAATGGGTCAGAACAGACTGAGTTGGGTTAAATGTGATATGCTTCCCACTAAAGCATAGGCTTTATTACAGTATAAGTCCTTCTATGAAACCTAATATAGATCCATAAAGAATACTCAGACTGGACCACATTTGAAAACTACTGCACAAACCATAAATACCAAGGCAGTTCAAAATATATTTGTGTCTTAACAAGATTCTCAGTCCAAGCTATTGGCTTACTGGTACATAGAATCATAGAATAGCAAGGCGGTACATCATTATTCATTATAATGAATGATGTTTTATCAGATTCTTTTCTGTAAAAATAAATTTCATCTCTTAGGTGATTATTGGAGCAGAGTAGCCCTTTTGGCTTCATTTATTAAATGATAGCATGTTTGGAAATAATAGTCTACCTAGGGGGCAATCCATAATTTTATATCCCAGGCCTGTGTCTTAGTGTCAATAATGGTAAAAAACAAAAAAATGTCTAAAATGGCAACAGTTACTTTGTTTGTGCTAGGACTGGTCCTATCACCTCTCAGAACACTAATACCCAGGTACCCAGGAGCAGTTTTCATCTCTCTCAGCAGCCCATGCTCCTTGTTGTGAGTTCAGCTTCTCCCTCTCCCCGAGTCAGTTCATGCTGCAAAGCACAGGCCCTTTCTAGCAGAACTGCAAACAGATGAGTGGCAGAATCACCAGCCCTGATCCTCACAGCTCAGACCTGAGGTCACAGTGATGGCACCAAAGGCTCTTTATATGAAGTGTGGCACCTTTCACCCATGTGACTAGATGGAGAACAGAGAGGGGCCTCTTCCTGTGAGAAACAAAGCAGCTGCCTAGTCGCTATTGCAAGTGATATCTCCACTGTGTTAAATTTCAGGTCATAAATGGAAATGAGATTGTTCAAACAGGCAAGTAAACCCTGTCCGTCCTCTAGCTGAGCAGTTCCCAGCCCTGGCCAGTGCACTGGCCTCCTACACATTCCAGCTCCTGCCACTCCCGTGTTAAGTCCTTCCTGTCAGGAATGTTAGATTGCTTTGCGTTCTAATTCAGGCAGAATCAAATGTCAGAGCAACCTGGCCAACTGTGCCTTAGTCTCCTGTTTGAGGTTGTTTTTGGTTGGGGGGGGGGGTATTTTTTTATTCCATTAATTTCTGTTTCATTTTGAAAGTTGGCAGTGGGGAAAACAAAGGGAGTTTCTCCGCTTAGAAACGTTCAGATATCTAGTAGGGAGGTTGTTTGATAGCAGTCATTTGCAGGTAATACATCATTGCAATCCTTCTCAGGCTCTTTGACTCTTTACAACTGAAGTTAGTTTTTAAAGGAGCTGGGGGATTGTCTTGTTTGTTTTTATGAATGCTTGATTTTTTTTTAATGAACCCCAAGAACAGTGCTTTCCTTAGTATTGGGACCTTATTGTTTGTCCCAATACTGAAGTAACTTTCCTTACCTATTCTAAAAAATTACCAGTTATGCTACAATTTTTTATTTATATAATACACAAGAAATTTGATACTGATAAAAAAGAAAAAATATTTATTTGAAAATTTAAATACCATTTATTCTACTTAGGGGTGATTACGTACTAGGAAGAGGGGCATTATATTTGGAATCTACCTCTTGTTTTTTAGCCTGTCCTTACTTACTATCTTTGAAAAAAAAACTGTATTTGTTCTCCCAGTAAATTCCTCTAGTTATAATTTTTAAGTAATTACTATTTTTTTAAAAGTATAACAAATCATCTGTCTTTGAGTTTCTCCTGTCCATAAAACAGGCCATCTTTGTTTTATTTTTTCTTTTTTGGGTTTTTGGGTTTGGGGTTTGTTGTTTTGTTTTTGATTTTTTAGGCAGGGTTTTTCTGTGTAAGCCTGCCTGTCCTGGAACTTAGTCTGGAGACCAGGCTGGCCTCAAACTCACGGAGATCCACTACTTCCTGAGTGCCGAGAGTAAAGACGTGTGCATCCGCCACCTCCTAGCCGCAAGTCAGCGTTTAAAAAGAAACCTGGTATAGTAAATGGATAGGTAATGATGCTGGTTCTGTATGTCTTACCACCTGAGTTTTGCACCAGAGAATGGGAATTATTTTAAGGAATAATAATAGCAATCGTTGGGTTGTTTTGTTTTTTCAAACATTTAAACGAAGGCCACCAACCCCTACTCGCATAAAGACAACTTCCTGTTTGCAACAAATTGAAAAATAAAGGCAAGCATTGCTTGATGCTGTAGTCACCTATGGCTTTACCCAGACTCTCACCACCACCCCAGTCCCCTGAACATCATAGCTAGGCTTGCTCTTAGCAGCTGTGTCCCGCTGAAGTAGGACTAGGTCCCCAGCCCTGTGTAACTTCTGCTTTCATAGCAGGAGCAGCAGCAGCAAGGCTCAGCCCTCTTGCTGCTCTCTGAACCTTACCATGACTAAACCTTATCTTATCACATGTCTTCCTGGGTAAACTCAGAGCCTTCCAGTGTTAGGGATTATCCTCGTGGGCTATTTCCTTTTCAGTTCGTGAGGATAGGACAAGATTTCTTTGACTTTATTTTCTGAAAAAAAAATAAGTAATTCTTGTTTTTTGGGAAAGTCCTAGGATGTAGAGATGAACGTCTCCTAGTTTTTGTGAGCCTGACAATGTTTTATCCTACTGTAAAACATTTTGGGGAGGGGGGTTTGTCCATCCATCCCCTCTCTCTGGTGGATATGTGAAAATTCAACAACCCATAATTCTAAAATATTATCTCTAAAGCATTGTTTTGTTTTGTTTTATTTTAAAATCCAAGAGTGAAATGAAAGTGTGCCTGTTACTGGGCATCTTTCTGGAGTAGCTGAGCTGGAATGGGTCTAGGAGCCTGTGTTCTCTGTGTGCTCATGTGTTGTGTTTACAGCTTCCCTTCCAGCCACACCCCCTCCCATATTCAAACAACTCCTGGGTCCAGCTTCTGGCTGCTCTCACCTCTCGCTCCTGCATCCTCACCTTGTTGGTGACTCTAGGCTGCCACCATGCATTGTTTTAGTTTTGAGCACAATGTGAATTCTTTCCGGATGTGACTGTTCTGCCCTCTTTGGGAGGTGAATCCATGGATCACGTGCACTTCTCTTCTGGGAAATGAAACCTCTGGTGCTTCTTTCTTTGCCACCTAATTTCCATGTTTCAGTTTTGACAAAAGCACTTACTGCGTACATAAGGCAGCTTGACTTAGGGTGTCATTTTCATAGACAGCCTAGTAATGCCACAGAGATTGTTGGTAAGAAGTCCTGTTATGCAGAAATGAATAACAGAGTGATTAAGGGAGGGGAGCTGAGCCTAACCAATGTGCGGAAAGAGGCAGAGACGTTCCATTTGTTTGGGGAGCACCATGTGTACCATGCTATAAGAGAAAGTACTGGACTGTTCATTCAGTAAAGAAAGTGGCTTCCTCCGTGTAGCCTGAATAAAGCCATGATTGGTGTGTTGTAG
Seq C2 exon
GAAAAGCGGATCGTGTCCCTGGATTCAGCCAACACGAGACTGATGAGTGCGCTGACACAGGTGAAGGAGCGGTACAGCATGCAGGTCCGCAATGGCATCTCTCCCACCAACCCCACCAAGCTTTCCATCACGGAGAATGGTGAATTCAAAAATAGCAGCTGCTGATGGCCTTCGTGACACAGACTGTGGGAGGAGGCAGGAGGAAGTGGCCCAGCTCTCCTGTCCCCAGCCCTTTAACCCTCCAGGTTTACAGAATGTTGCTTCAAATGGCGATGTTGTGAGAAACTCTTACATGAAGAAAGGAACCTTTTCTTTCAGGGCTTAAAGCAAAGACTTCAAGTTCAAGTTCGATGCTTTTCCCCAGTGTCTCTATGTACATAGGGAATTTAGTTCTGGGCCATGTACAGAAATACCACTGTAATATACCAAAAGGAAGTTAATAATGTAGATTGCCTTTTTAATTATTGCTATTTTATTATTGTTTTTCTCTTATTGAAAGCACTGCAGTTATTAGTGGAGGAAAGGTAGGAGCCGAGTGTGAGTGAAAAATGAGCCTCTTGGTTCTGTAGCTAAAGTGTATTGGATAGGAGCACGTGGAATGCAATAGGACCTTGTCTGATGGACGTTTTCAGGGATTCATCTGCCAGTTTAAAGCCCCACCCTGTCCTTACCATTAGGAAAACATGCAAATACCAAGATCCATATGAAACAATAACTTGCCACTGTCAACCAGGATGCTCCCGGCAGACTGCAGCCTGGTTTGCAGAGCCACCATTTCAGAGGACACAGGTAAACGTGACTGACTGTACCAAAACCAGACTAGGAAGGATTTCTGTTAAACTCCTCTGTCTATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917:ENSRNOT00000033324:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.709
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.8=100)
A:
NA
C2:
PF120043=DUF3498=PD(4.8=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]