GgaINT0038841 @ galGal3
Intron Retention
Gene
ENSGALG00000004323 | RASAL2
Description
NA
Coordinates
chr8:6757285-6760922:-
Coord C1 exon
chr8:6760835-6760922
Coord A exon
chr8:6757450-6760834
Coord C2 exon
chr8:6757285-6757449
Length
3385 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGTGGGCTGTCTGTTGCAGGAG
3' ss Score
9.85
Exon sequences
Seq C1 exon
GCTCATGGCAGTTGAAGAGGAACTGAAGAAAGATCATGCAGAGATGCAAGCTGTCATCGATGCAAAGCAGAAAATTATTGATGCACAG
Seq A exon
GTAAGGAGCTCAGGATGCCCAAGAGCTAAGTGTTCTGTGCATAGAACCCATTATTTTCTCCTATCGTCTTGCCCCAGCGTTGTTATCTAGCTCCCAAGCCAGTATTGGCTCATGGTGTTGCCCATGTGACCTACTGCCTTCTAGGAGAGCTGTGTTTTTTAATTAATGCAGACTGCACTGTCTGACACTGGCTTTTGAGAAAGCTGGCAACAAATCACAGGACTGACTGCTTTCTCCACAATCTTTTCTGCTTTATGAGATCCCGGGGGGCAATGGAATAGTGGTGCATTGTGTAGACATCATTCCAAGTGTGGGCCTGGGAACTCTGGAGAAGCTGTGCTTCATACCAGCATAGTTGGATTGCCATGTGCATGCATCTCGGCTATGCAAGCTAAAAGCACGGCTTTGAACGTTCCTGTGAAGACAAGAGAATGCTTGCCATGGAGCATTGCCCAACGTAACCCCATATGTGGCATTTCACCCCATCCGACTGTCTGCGTCAGTCTTGGAGAAATGCCCCCTCTGCCACAGAGTGCAGTGCTTGTCTCAGTCGACACGAGTTAGCTTTGGGAAGCGGGGCCTCGTGGGCAATGCATGTGGGTGTATCGTGTGGGATCATTTCAGCTTTTCTGCTGTGTCTGTGCTGATCCCAGAGAGCAAAGCTTGTCCAACAGAACCCGAGGCTGGTTTGGTATCTGCCTGCCACGTTGTGTTTGGAGGATGTCTTTCCTGCTCCTGGGTTTTTCAACTATAAGTTTATGAACAGATAGCCTTTCAAAATTGCCTTATTTCAGGAATAACCCCGATTGTTGCAGGAAGTCGTTTCCCTCACGTGAATGCTTTTAAAGCTAGATTCAGAACAGGCCCACCAGAGGAGCCCACGTGTTTGCTGAGGAGCGTAGCAATCCATCTAAGTCACATCTGGAAGATTTTTTTCTTAGTCTGTGATTCCCCTGGCACAGGGATCCAGCAGGGATTAGACAAGAAGAGTTCTCTATCATGCGGTTTGTGGAATGGAGTTGGGACCTGGCTTATCCCATCCGTTTGAAGAGAGGTTGCTGCAGGGAAACCTGGGTTTCTTGTGCTTAATTGGCCACGAGATGCCTGTCAGGATTTGCTCTTCAGCCTTGCGTTCAGGTGCAGCACCCGACACAACCCAAAGCACAAGGACAGCCCTGTCCTCAGCACTGTTCACACCAGCTCTGGGCAGTGCCTGCTGTGCACAGCGGTGCCTGAGGCCCTCCAGGCTGACTGAGAGCCCCCACTGAGCAGGGGAGGTCTGGCAGCACTCTCCTTGGAGCTGCAAAGGGTACTAGCCCAGTTGCTATTGCAAGTGACATCTTCGCTGTGTTGAATTACAGGTCATTAATGGGAATGAGATAATTCAAACAGGCAAGTAAACCCAATCAGTTCTCTAGCTGAGCAGCACCCAGTCCTGGCCCGGTGCACTGACCTCCTACCCATTCCAGCTCCTCCCACTCCCTGTGCCCAATTCCTGCATGTTAGATGTGTTGGAGAGGTCGTGTTTTCCTTTGGGTGAGAGGACGCCTCTACTCACCGAGCTCATTTCCCAGGCGTAGGTTGCCAGCAGCCTGCAGACTGTACAGAGAGCACTCACCAGTGCCAGAAAATCACCAGCCTTTCACTTTTAACAATCTGTAAAGACACTCCTGGGGAAGAAATTTTAGTTTTGAAGTACATATTCCAGGTGCTTACTGGAATATATACATATTGGAAATTTAGTCCGAGGAGGAGGAGCTTTAACTTGCTGAAGAGCACATGGCTGCAAAGGCAGTTGGTTCTTTCACCATTCAGACCACAATTCAGGATTTATTTTGGCATGGGGGAAAGGTTAAGGCCTTCATCTCCTCCATGGCCATTGCTCCCAGCTCGGGCAGCAGCGTGGTGCTGGGGTGGGCTGCAGCCTGCCTTCCTGTGTGTTGCCTTCTGCCTCCTCCATTTGCTCTGCAGCGCAGAGATTGGTCTCTGCAGGGCTGCGGTGTAAGCAGCAGTTACATCCTGCTTTGTTTTTGCACCCAACCATTTCCCCCTGTGGGGAGGCCCCTTGAGAAAAGCAGGCACGATTACAGCAGTGCCGCGCAGCCACTGTGCTGGGATGGGAATGCCAAGGGGCTGTCTGTAGCACCCACGTCTCCTCATTGCCTGAACCGTCCCGTAATGTTTGTGCCTCCTGTACATCATTTTCCGTCCATTTTGTTTCTCAGCAGGCTGGACAGAGAAGAGTTCCTACACGCTACTTTTTTCATTCGAGTAAGCTGGTCATTTTTCCTCCTCAGAGTGAGAAGCACAGTCAGCTGATAGCATGGAGAGCGTGTGGGCCTGCTGCCATCTCTGTGGCTGCATTTCTTAAGTTATTTTTTTGGAAAAGATGAGAACTGCCGTTTCTAATCGCACCAGCAGCTCTTTAGCTTGACCCTTCAGTGCTGTATCCCACTGCATATAATCTAGTTGTTACGAGGCTGGGTTTTGCTGATGGCTTCTTAAGGTTTCTTATGATAAATTCACCACGTGTCCTTTAGATCTGCGACTTCTCTTGCTAAAAGTGGAGGCTGGAAGAACCAAAACTGGGCTGTGGGAACCCAGGATTGAGTAGAGCCCGGGAGCCGCTCCGAGCTGGAATGGGTCTAGGAGCAGTGTGTGTTCAGTGTTTGTTCTTTGTGTTCTGTCCATGGCATCTCCCCCTCCACCCACACTGCCCTCTTTCTCCTTCACCTCAAGTAACCCCTTAGTTGTAGCTTTTGGCTGCTTCTCTGTGTTGCTGCTGCACCCTCACTCCTGCTGATGACTGCAGGCTGCCATCATTTGCTTTTTTTTCTTTTCCTCCCATTTAATTTCCAACATACCATCGGTTTATTCTGAGCACACTCCATCCCAAATACGGAGACGATGGCCATTAGATACCACCTGCACTTTTCTCTGCCAGATGAAACCACCACTTTTGTTTTCTGCTGCCTGTTTCTGTTTTTTCTAACACGTTAAGAGGAAATATTGGCTATTGTTATTAACGCCAGCACCCGTGCCCCCCTCCTCCCCCTTCCATGGCAAAACGCTGCATTTCCATCTGCCTCGGCTGGAGGCTGTCTGGAGAGAGCTCACCACGTAACTCCGACTCACCATCACCTCCATCACGCCAAAGGCCAGGAGGGCCCGACGGGCACAGCCCACGAGGCCGCGCCACCCCAAGAAAACAGAAAGAGGCAGACATCCCATCGTACCACAGAATGTTAGCTGAGCTGCCTCGGCCTAGAAATCATCTGGAGGTGTTGTCTCGGCCCCGGGTCCTGGCAGTGCCCGTAACGCAGGTTGTGGGGCAAAGGCGGTTCGTTTGTGAAGGAGCTCTGACGCTGTGGGCTGTCTGTTGCAG
Seq C2 exon
GAGAAGCGGATCGTGTCCCTGGACTCTGCCAACACGCGGCTGATGAGTGCCCTGACGCAGGTGAAGGAGCGCTACAGCATGCAAGTCCGCAATGGCATCTCCCCCACCAACCCCACCAAGCTTTCCATCACGGAGAATGGTGAATTCAAAAACAGCAGCTGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323:ENSGALT00000006891:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.723
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.8=100)
A:
NA
C2:
PF120043=DUF3498=PD(4.8=43.6)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]