RnoEX0074224 @ rn6
Exon Skipping
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74771522-74777726:-
Coord C1 exon
chr13:74777639-74777726
Coord A exon
chr13:74774919-74774949
Coord C2 exon
chr13:74771522-74772377
Length
31 bp
Sequences
Splice sites
3' ss Seq
TCCACTGTGTTAAATTTCAGGTC
3' ss Score
10.03
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCTAATGGCTGTGGAAGAGGAGTTAAAGAAGGACCACGCTGAGATGCAGGCAGTTATTGATGCAAAGCAGAAGATAATTGACGCACAG
Seq A exon
GTCATAAATGGAAATGAGATTGTTCAAACAG
Seq C2 exon
GAAAAGCGGATCGTGTCCCTGGATTCAGCCAACACGAGACTGATGAGTGCGCTGACACAGGTGAAGGAGCGGTACAGCATGCAGGTCCGCAATGGCATCTCTCCCACCAACCCCACCAAGCTTTCCATCACGGAGAATGGTGAATTCAAAAATAGCAGCTGCTGATGGCCTTCGTGACACAGACTGTGGGAGGAGGCAGGAGGAAGTGGCCCAGCTCTCCTGTCCCCAGCCCTTTAACCCTCCAGGTTTACAGAATGTTGCTTCAAATGGCGATGTTGTGAGAAACTCTTACATGAAGAAAGGAACCTTTTCTTTCAGGGCTTAAAGCAAAGACTTCAAGTTCAAGTTCGATGCTTTTCCCCAGTGTCTCTATGTACATAGGGAATTTAGTTCTGGGCCATGTACAGAAATACCACTGTAATATACCAAAAGGAAGTTAATAATGTAGATTGCCTTTTTAATTATTGCTATTTTATTATTGTTTTTCTCTTATTGAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.364 C2=0.709
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.8=100)
A:
PF120043=DUF3498=PD(1.4=63.6)
C2:
PF120043=DUF3498=PD(4.8=43.6)
Main Inclusion Isoform:
ENSRNOT00000033324fB12185
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAGATGCAGGCAGTTAT
R:
CTGTGTCAGCGCACTCATCAG
Band lengths:
112-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]