MmuEX0038904 @ mm10
Exon Skipping
Gene
ENSMUSG00000070565 | Rasal2
Description
RAS protein activator like 2 [Source:MGI Symbol;Acc:MGI:2443881]
Coordinates
chr1:157135182-157146277:-
Coord C1 exon
chr1:157146190-157146277
Coord A exon
chr1:157143570-157143600
Coord C2 exon
chr1:157135182-157140875
Length
31 bp
Sequences
Splice sites
3' ss Seq
TCCACTGTGTTAAATTACAGGTC
3' ss Score
8.8
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCTAATGGCTGTGGAAGAAGAATTAAAGAAAGATCATGCTGAGATGCAAGCAGTTATTGATGCAAAGCAGAAAATAATTGATGCACAG
Seq A exon
GTCATAAATGGAAATGAGATTATTCAAACAG
Seq C2 exon
GAAAAGCGGATCGTGTCCCTGGATTCAGCCAACACGAGACTGATGAGTGCGCTGACACAAGTGAAGGAGCGGTACAGCATGCAGGTCCGCAATGGCATCTCTCCCACCAACCCCACCAAGCTTTCCATCACGGAGAATGGTGAATTCAAAAATAGCAGCTGCTGATGGCCTTGGTGACACAGACTGTGGGAGGAGGCAGAAGGAAGTTGCCCAGCTCTCCTATCCCAGCCCTTTAACCCTCCAGGTTTACAGAATGTTATTTCAAATGGCAGTGTGGTGAGAAACTCCTAAATGAAGAAAGGAACCTTGTCTTTCAGGGCTTAAAGCAAAGACTTGAAGTTTGATGCTTTTCCCAGTGTCTCTATGTACATAGGGAACTTAGTTCTGGGCCGTGTACAGAAATACCACTGTAATATACCAAAAGGAAGTTAATAATGTAGATTACCTTTTTAATTATTACTATTTTATTATTGTTTTTCTCTTATTGAAAGCACTGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070565_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.091 C2=0.644
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.8=100)
A:
PF120043=DUF3498=PD(1.2=54.5)
C2:
PF120043=DUF3498=PD(4.8=43.6)
Main Inclusion Isoform:
ENSMUST00000078308fB3363
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCTGAGATGCAAGCAGT
R:
TTGTGTCAGCGCACTCATCAG
Band lengths:
115-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types