HsaEX0052394 @ hg19
Exon Skipping
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:9874]
Coordinates
chr1:178436469-178448644:+
Coord C1 exon
chr1:178436469-178436556
Coord A exon
chr1:178439828-178439858
Coord C2 exon
chr1:178442210-178448644
Length
31 bp
Sequences
Splice sites
3' ss Seq
TCCGCTGTGTTAAATTACAGGTC
3' ss Score
9.03
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCTAATGGCTGTGGAAGAGGAACTGAAGAAGGATCATGCTGAGATGCAAGCAGTTATTGATGCAAAGCAGAAAATAATTGATGCACAG
Seq A exon
GTCATAAATGGAGATGAGATTATTCAAACAG
Seq C2 exon
GAAAAACGGATCGTGTCCCTGGATTCAGCCAACACCAGACTGATGAGCGCGCTGACCCAAGTGAAGGAGCGGTACAGCATGCAGGTCCGCAATGGCATCTCCCCCACCAACCCCACCAAGCTTTCCATCACGGAGAATGGTGAATTCAAAAACAGCAGCTGCTGACGGGCTTTGTCTGTGGAAGGAGACAGAAGGAAATTGACCCACTCTCCTATCTCCAGACCTTTACCTAGCCCCTCCAGGTTTACAGAATGTTGCTACTTCACAATGGCGATGTGGTGAGAAACTCCTGAATGAAGAAAGGAACCTTGTCTTTCAGGGCATAAGGCGGCGACTTCCAAGGTCAATGCTTTTCCCCCACATCTCTATGTACATAGGGAACTTAGTTCTGGGCCATGTACAGAAAATATCACTGTAATATACCAAAAGGAAGTTAATAATGTAGATTACCTTTTTGATTATTGCTATTTTTATTATTGTTTTCCTCTTGTTGAAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391-'27-30,'27-29,28-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.270 A=0.682 C2=0.666
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(5.8=100)
A:
PF120043=DUF3498=PD(1.2=54.5)
C2:
PF120043=DUF3498=PD(4.8=43.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGTGGAAGAGGAACTGA
R:
GCTGAATCCAGGGACACGATC
Band lengths:
112-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)