DreEX0061772 @ danRer10
Exon Skipping
Gene
ENSDARG00000042833 | rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-2274]
Coordinates
chr15:4558093-4562763:-
Coord C1 exon
chr15:4562553-4562763
Coord A exon
chr15:4560042-4560065
Coord C2 exon
chr15:4558093-4558653
Length
24 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTCTGTTTTGACAGTGT
3' ss Score
8.03
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTTCAGACTCAGAGGAAGTTTTGGCTCCTGGCCGACGGGCGTCTCTCTCAGACCTAGGATCAGTGGAGGATATTGAGGATTTAAGTGTCCGGCAGTTGAAGGAGATTCTAGCCCGAAACTTTGTCGACTACAAGGGCTGCTGTGAGAAATGGGAGTTGATGGAGAGGGTCACCCGCCTGTACAACGACCAGAAGGACCTGCAAAACATGG
Seq A exon
TGTCTAATGCTACAGAAGGCACAG
Seq C2 exon
ACACTGGCTCTGGGACGGCCGTGGAGGAGAACCTCTGTAAGATCTGTATGGACTCACCCATCGACTGTGTGCTTCTGGAGTGCGGACACATGGTCACGTGCACAAAGTGTGGCAAACGCATGAGCGAATGTCCCATCTGCCGACAGTACGTGGTGCGGGCAGTGCACGTGTTCAGATCCTGAACAACATTTTCCATTCTCGGAGATCTTCCCCTGATCAACAGATACTGTAGAAAACCATCATGTGGCCTTTAAATCTTGCACAGTTTATCCTGTGGCACTTTATATGTGATAATGACTGAGACGCGCAAATCTCAAACCAATAACTGCGCTGGTTTTACTTTCATTTCTTCAAAAGTGCGTCTTCTGGATATTTTGAAGAGGAAGAAGCTGTTCGTAATCATGGATCACATGTTTGTTAGATGACAAAAATCAGTGCAGCAATAATGCCCATTTCTGCTATTGGTAGGATCATATGAATGTTATAAGCACAGATAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042833_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=1.000 C2=0.046
Domain overlap (PFAM):
C1:
PF102084=Armet=PU(88.1=83.1)
A:
PF102084=Armet=PD(10.4=77.8)
C2:
PF139201=zf-C3HC4_3=WD(100=75.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTACAACGACCAGAAGG
R:
CACTCCAGAAGCACACAGTCG
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]