MmuEX6088219 @ mm10
Exon Skipping
Gene
ENSMUSG00000020696 | Rffl
Description
ring finger and FYVE like domain containing protein [Source:MGI Symbol;Acc:MGI:1914588]
Coordinates
chr11:82802449-82810218:-
Coord C1 exon
chr11:82810008-82810218
Coord A exon
chr11:82808513-82808536
Coord C2 exon
chr11:82802449-82806189
Length
24 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTTTTCCTTTTCAGTGT
3' ss Score
11.89
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
TCCGTTGACTCAGAGGACAGCTTCGTCCCAGGCCGGAGGGCCTCGCTGTCTGACCTGACCCACCTGGAGGACATTGAAGGCCTGACCGTACGGCAGCTGAAGGAGATCCTGGCTCGTAACTTTGTCAACTATAAGGGCTGCTGCGAGAAGTGGGAGCTGATGGAGAGGGTGACTCGGCTGTACAAGGATCAGAAAGGACTCCAGCACCTGG
Seq A exon
TGTCTGGTAATGAAGACCAAAACG
Seq C2 exon
GGGGAGCAGTGCCTTCTGGCCTGGAGGAGAACCTGTGTAAGATTTGCATGGACTCACCCATTGACTGTGTTCTGCTGGAGTGTGGCCACATGGTGACCTGTACCAAGTGTGGCAAACGCATGAACGAATGTCCTATCTGCCGGCAGTATGTGATCAGAGCAGTGCACGTCTTCCGGTCCTGATGGCTAGCATTGGTTTCTTCAGTGCCTTACAGGACATAGCCCACGATGTCTGGGCTCAGGGTTGGTCCAATACACAAGGGCAGTCTACTGTGAGCAACTGGCAGTGTTCTTAAGACTAGGACAAGCAGAGTTGCCTGGCATGCTTGTTTTAGGTGGCAGAGCCCAAAACCAGTGGGAACTGGTTCACATCACATGGGTGAATGCCTGCATCTGTGATCATTGGATGGTGATGGTCATCAATGAAGAGGTCTTTCCAGAACGTGGACCAGTCTCTCCTGTCCTAAGATCCATTTCATACATCTGTACACCACTCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020696-'27-24,'27-22,28-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.685 C2=0.017
Domain overlap (PFAM):
C1:
PF102084=Armet=FE(68.6=100)
A:
PF102084=Armet=PD(2.9=33.3)
C2:
PF139201=zf-C3HC4_3=WD(100=75.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAAGGACTCCAGCACCT
R:
CCACACTCCAGCAGAACACAG
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types