BtaEX6085148 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013645 | RFFL
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:24821]
Coordinates
chr19:15396082-15400325:+
Coord C1 exon
chr19:15396082-15396292
Coord A exon
chr19:15397462-15397485
Coord C2 exon
chr19:15399960-15400325
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCCTTCCCTTTGCAGTGT
3' ss Score
12.45
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
TCCGTCGACTCAGAGGACAGCTTTGTCCCAGGCCGGAGGGCCTCTCTGTCTGACCTGACCGACCTGGAGGACATCGAAGGTCTCACCGTGCGACAGCTCAAGGAGATCCTGGCTCGCAACTTCGTCAACTACAAGGGCTGCTGTGAGAAGTGGGAACTGATGGAGAGGGTGACGCGGCTGTACAAGGACCAGAAGGGCCTCCAGCACCTGG
Seq A exon
TGTGCAGCGCTGAAGACCAAAACG
Seq C2 exon
GGGGAGCAGTGCCGTCCAGCCTGGAGGAGAACCTGTGTCGGATCTGCATGGACTCGCCCATCGACTGTGTTCTGCTGGAGTGCGGCCACATGGTCACCTGTACCAAGTGCGGCAAGCGCATGAACGAGTGCCCCATCTGCCGGCAGTACGTGATCCGGGCCGTGCATGTCTTCCGATCCTGAGGGCCTGTGCCGGCTTCTGCAGTGCCTTACGGGGACAGAGCTCCAGGTGTCTGGGCCCACAGTTGGCGGCTTGCAGACGGGCAAGCTAACCAGAAAATGCGCAGTGTTCCCAAGACCAGGGCGAGCAAAGATGCTGTGTCATCTCTGGGCATGCCTGTCTTGCTTCAGAGGTACACTGTGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013645-'9-12,'9-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102084=Armet=PD(85.2=97.2)
A:
NO
C2:
PF139201=zf-C3HC4_3=WD(100=75.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAACTGATGGAGAGGG
R:
GTCCATGCAGATCCGACACAG
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]