GgaEX0002748 @ galGal4
Exon Skipping
Gene
ENSGALG00000002225 | RFFL
Description
E3 ubiquitin-protein ligase rififylin [Source:RefSeq peptide;Acc:NP_001025882]
Coordinates
chr19:4498577-4502458:+
Coord C1 exon
chr19:4498577-4498784
Coord A exon
chr19:4499703-4499726
Coord C2 exon
chr19:4499991-4502458
Length
24 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTCTTTATGTTGCAGTTT
3' ss Score
10.03
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TCTACTGACTCAGAAGATAACCTGGTGCACGGGAGGAAGGCTTCTCTTTCTGATCTGACAAGCATTGGAGACATCAGTGAGTTGTCTGTGCGACAGCTGAAGGAAATTCTTGCTCGCAACTTTGTCAACTACAAAGGCTGCTGTGAGAAGTGGGAGCTGCTAGAGAGGGTGACCCGTCTTTATAAAGAGAAAGACCTTCAGCATCTAG
Seq A exon
TTTCCGACACTGATGATCAAACTG
Seq C2 exon
GTGGTGCTGGGCTCCCTGGTGTGGAGGACAACCTCTGCAAAATCTGCATGGACTTACCCATAGACTGCGTCCTGCTCGAGTGTGGCCACATGGTCACTTGCACCAAGTGCGGAAAGAGAATGAGTGAGTGTCCCATATGTAGGCAGTATGTGATAAGGGCTGTCCATGTCTTTAAGTCTTAAGTATGCATAAGGGAGACTGGTGATGCCTTAAAGCCTCATCTGCTGTTAGAGAAATGGGCAAAGTTGCTACAAAAAGTTAGGTCAGAGATTAAGATACAGGCCCTGCTGGGAGCAAGGGAAGGATGAAGCCTGGGGAATTGCCTACTCAAGCCATGTTTGCCTGTGCCCTTTCCACCATACTGTTTTAAACCACAGTGCCTGGACTCCCCGGAGCTTATTGCCAGCAGCAGACAAATAATTAGCAACCTCCATTCTAGAGTAACTGGATCCTCAGGTGGGAGACAAATGGATGTTTCTCACCATAGATCCTGAAGGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002225_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.556 C2=0.017
Domain overlap (PFAM):
C1:
PF102084=Armet=FE(89.6=100)
A:
PF102084=Armet=PD(6.5=55.6)
C2:
PF139201=zf-C3HC4_3=WD(100=75.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCTGCTGTGAGAAGTGG
R:
TTGTCCTCCACACCAGGGAG
Band lengths:
107-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]