RnoEX0075350 @ rn6
Exon Skipping
Gene
ENSRNOG00000007596 | Rffl
Description
ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:RGD Symbol;Acc:727916]
Coordinates
chr10:70157621-70164000:-
Coord C1 exon
chr10:70163790-70164000
Coord A exon
chr10:70162254-70162277
Coord C2 exon
chr10:70157621-70159987
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCATTTCCTTTCCTTTTCAGTGT
3' ss Score
11.67
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
TCCGTTGACTCAGAGGACAGCTTTGTCCCAGGCCGGAGGGCCTCGCTGTCTGACCTGACCCACCTGGAGGACATTGAAGGCCTGACCGTGCGGCAGCTGAAGGAGATCCTGGCTCGCAACTTCGTCAACTATAAGGGCTGCTGTGAGAAGTGGGAGCTGATGGAGAGGGTGACTCGGCTATACAAGGATCAGAAAGGACTCCAGCACCTGG
Seq A exon
TGTCTGGTAATGAAGACCAAAACG
Seq C2 exon
GGGGAGCAGTGCCTTCTGGCCTGGAGGAGAACCTGTGTAAGATTTGCATGGACTCACCCATTGACTGTGTTCTGCTGGAGTGTGGCCACATGGTGACCTGTACCAAGTGTGGCAAACGCATGAACGAGTGTCCCATCTGCCGGCAGTATGTGATCCGAGCAGTGCATGTCTTCCGGTCCTGAGGGCTAGCATTGGCTTCTTCAGTGCCTTACAGGACATAGCCCAAGATGTCTGGGCTCGGGGTTGGTCCTATGCACAAGGGCAGTCTATTGTGAGAAACTGGCAGTGTTCTAAGACTAGGACAAAAGGAGGTGCCTAGCATGCCTGTTTTAGGTGGCAGAGCCCAAAACCAGTGGTAACTGGTTCAGATCACATGGGTGAATGCCTGCTTCTGTGATCTTTGGGTGGCGACGGTAATCAATGAAGAGGTCTTTCCGGAACGTGGACCAGTCTTCCTCCGCCCTAAGACAAATTTTTCATACATCTGTATACCACTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007596-'18-18,'18-17,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.704 C2=0.017
Domain overlap (PFAM):
C1:
PF102084=Armet=FE(75.3=100)
A:
PF102084=Armet=PD(3.2=33.3)
C2:
PF139201=zf-C3HC4_3=WD(100=75.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAAGGACTCCAGCACCT
R:
CCACACTCCAGCAGAACACAG
Band lengths:
108-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]