DreEX0063461 @ danRer10
Exon Skipping
Gene
ENSDARG00000042652 | rreb1b
Description
ras responsive element binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-070912-273]
Coordinates
chr2:21395086-21398620:+
Coord C1 exon
chr2:21395086-21395275
Coord A exon
chr2:21395360-21397940
Coord C2 exon
chr2:21398459-21398620
Length
2581 bp
Sequences
Splice sites
3' ss Seq
GATTGTTTAATTTCTTTAAGGTC
3' ss Score
8.07
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGCAACATTTGTTGCATTACCTTTCGCAAACACCGTGGTCTCCTGCGTCATAATGCTGCCATTCATAAACAGCTTCCAACTGACCCCTCTGGGCGACCTTTTATACAGAACAACCCCTCCATCCCACTGGGATTTGGCGATTTAGCTTTCATCGACTTCAGCTGTCAAAAGTTTCCACAAATTGCACAG
Seq A exon
GTCTGGTGTGAGACTAACCTGCGCCGATGCTCTAGCAAGTTCCATAAGTTTGTTTGTGAGGACTGCAACAAGGCCTTCCCTATTCAGCAATCTCTGGATCTTCACAAGTCTTCACATAACTGTAGTGTAGACACCAGCACTGATCCTCAGGAACATAAAGCAGATGCTGTTATAGACGCCCCAAAAGTAAACTCCCATTCCGAGGATTCCAAGGAGGTCAGTGAACTAGCACCACACGTTGACACTACTAGTTCAGATGGGAAGAATGGTTTCATGGAGCGCCTGGGTCTCCAGCACTCCTCCTTGGCCAAGCTAGAGAAATCAGAAGAGCAGATTCAGCAGGAGGTTTTAGACAGCATTCGATTCATTCGCGTTGAGCCACCATCAACAAATCTACCTCAAGAAACCAGCGGCAGTCTTGGTGTCTCAATCCTTGAGCCTGTCTCTCTTCAAGCAATGAACAAGAACACAGCCCTTGGCCTTCTATCGCTACAGCCACTACATGCTGTGGTCAGTAATGGCATGTTTGTCCCAATAAGCGGTCAAACCGCTGTAGAGCTGGCGGATATTGAACAAATCCTTAAAATCGCAACCTCTGTACCACCTCAGATGTCTTTGTCTATGCTTCCCAAAAGTCTGGGTAGTCCTCTTCAAGTGGACCCCAGACAGATTTCTTCTTTAAAACCCAAGTCCTTAATCACTCCCCGATCCAGCATGGGTGCCTCCACACCACCTCCACCTGTCATGAATGCCCAACAGGCCTCATCCGGCAACATCAGTCCTAGCCTTCCACCCCAAACAGGCCAACAAGTGAGAACTGCCAGACAGTCTTCAGCCTCATCCTCATCCTCAACTTCCTCCTCTCCCACCAATTGGGAAACTACTCAACTGGGATCTGATGTCATAGGAAACACGATTATCTCATATGAAACTGGAAAGCAGGAAGAGTTTGACAGCAAAGAGAAGGACATGAGAGTTGTCCCCAAAAAGACAGCTAAGACTGAATACCCTTGTCGGTTCTGCAAAGAAGTATTCTCTTTCTTAGGTGGCCTCCAGGCACATATGCGTCACCATTTGGGAGCATCCCCATATCAGTGCACCATTTGTAGCTACGCTGCTCCTGACAAAGCGACACTGATTCGACATCTCAGAACACACAGTGGTGAGCGGCCATACGTCTGTCGCCTCTGTCACTACCCTTTCACTGTGAAAGCCAACTGCGAGCGCCATTTGCGCAAGAAGCACATGAAGAACACACGCAAGGACATCGAGAAAAACATTGAATATGTAACCACCTCCTCGAGCATAAGCAGTGTAATTGGAGGCACCACACTAGACCTCCTTGATACAACCAACGCTGGCAACACATCTTGTCGATATTGTGGGGAGGACCTTAAGAACTACCGGGCCCTTCAGATTCACCTGCGAACTCACAATGGATGTCAAAAGAAACCATTTGAGTGCAGGCAATGTGGGGCGACATTTCTCGCTAAAAGGAACTGTATTCACCATTTGCTGAAACACCACCCAGATGTGCCAGAAAGGGAAATTGAGGAGCACATCAAAAGTCTTGTACCAGTTGGAGGTGAAGTCAATGCTCAATCCAACACTTCAGCCACAAATGGGCTTGTTAACAGCTCCATTTCCCAGAATGTAGGTACCTTCTCTGGACCTGTTGAGGAGCAGGAACAACCTTTGGATTTCTCTAGCAAATCTCAGAAAACAATGCCTTCAGTCGTTAAAATTGAAGGAGCAGCATCTCCTCTGTTAAATGACTGTTCTATGGAGCCCATTGACCTCTCAATACCCAAGGATCCAGAGAAGAAGAAAATGAGGAAAGAAGTTCCCCAGAATTATCAAGAGCTCAATAAAGAAAAGACTTCAGAAACAGCCCCTGGACTTCTCGCAGCTATTCCGGTCTCCATTCCTAGCCTAGCCTCAGTTCTATCCAGTGACATTACTAAGCCTTATACTCGCTTAAAGCCCCTGCTACCAAAACCATCTTCTGCTTCTAGTACTGCGGAAATGGCACCACTGGCCTCTATTGCTCAGATTATCTCATCTGTTTCAGCTACCCCAGTGCTTATCGAAACAGGAATGGATGCAAAAAACTGTATTAGTGCAGTGGATTTTAAAACACTAAGTGAAAACAAGAGTCCCATAGGCACCACTAAACTGGATTCCGTGCTGAATGGGTCTCCTGATAACTCAAAGAAAAGAGGCAAGAAGAGAGTGTTTCAGGAGGAGATCTGTGATTCGAGAATAGCTGTGGGCAGTGGGATTGACCTGGAGTCAAGTGGCGAGTTTCCCAGTGTAGAGAAAATGTTGGCTACTACTGATGCAAATAAGTTCAGTCCCTACCTGCAACCCAATCAGATGGAGCCAATGATGGAGGAAAAAGAGAAGCAGTCAGCTGACGAGGAGGTGAAGGAAATACGAGAAGACAAACCAAAGAAACCTCCACAGAACAAAGGAAAGAAAAATGCTTATTCCAATTCAGTGCAGAAAATGACCTGCCCCTACTGCCCTCGATTGTTCCCGTGGGCCAGCTCATTGCAAAGGCATATGCTAACACACACAG
Seq C2 exon
GTCAGAAGCCGTACCCTTGTCCTCAGTGTGACTCGTTCTTCTCCACCAAGTCAAACTGTGAGCGACACCTGCTTCGCAAACATGGAGTCTCGAATCGGGCACTTCAAAACAGTGGATCTCGACTCAAACCTAAGACAGATGAAGAATCCTTAGGAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042652_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.460 C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=PU(38.5=1.2)
C2:
PF134651=zf-H2C2_2=PD(57.7=27.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]