GgaEX1050334 @ galGal4
Exon Skipping
Gene
ENSGALG00000012799 | RREB1
Description
ras-responsive element-binding protein 1 [Source:RefSeq peptide;Acc:NP_990380]
Coordinates
chr2:64711158-64797634:-
Coord C1 exon
chr2:64797432-64797634
Coord A exon
chr2:64756249-64757768
Coord C2 exon
chr2:64711158-64733436
Length
1520 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGCATGTCTTGCAGGTC
3' ss Score
10.93
5' ss Seq
TTTGCATGT
5' ss Score
-5.25
Exon sequences
Seq C1 exon
AGAAGCAGCTGGAAACTTTAAACAGTTACAAGGTGACACCAAGTTCACCAAACAGTTCGGACGGAGCAGACTTGTCCTCCATTGATGCCATGATGTCAGCAGTAATGAATGTGGGGAAGATAGCTGAAAATGGGGGGACCTCTCAGACTGTCAAATCTCCCTCGAAGTCTCCTGCACCAAATCGGATTGGTAGGAGGAATCAG
Seq A exon
GTCTGGTGTGAAACAAATTTGCGAAGGTGCATCAGTGAATTCCATCGGTTTATTTGCGAGACGTGTAACAAGGCATTCCCCATGCTTTTGGCACTCAAACTGCACACAGAAACTCACGTGATGGATCAGGGAAGAGACAAGCACAAGCTACAGTCCACATCCCTACCCAGTGAGAACCCAGACCAGAAAGCCTTCATGGCATCCTTGGGCCTACAGTACACCAAAGACATCAAACCTGTCAAGCAGGAGGACGATACACAAGATGAGGTCCAAGAAATGCGGCTCAGAGCACTGAAGAGTAACCTACCTCAGGAACCCGGCAGCACTGGCCTGCTTAGCCTCTCTCCTCTGGAAGCTGCCACTATGGGGGGGCCATTTTCAGTCCTCCCACCTACAAAGGAGAACATAAAGCTCCTCTCGCTGCAGCCTTTCCAGAAGGGTTTTATCATCCAGCCTGACAGCAGTATTGTGGTAAAACCCATCTCCAATGAATCTGCAATTGAGTTGGCAGACATTCAGCAGATCTTGAAGATGGCTTCTTCCGCTCCTCCTCAAATCAGTCTTCCTCCACTTTCTAAGGCACCTTCTGTCCCTGTGCAGTCCATTTTCAAGCATATGCCACCACTGAAGCCAAAGCCTTTGGTAACGCCCCGAACAGTTGTCGCAACTTCTACACCTCCTCCTCTTATCAGTGCCCAGCAAGCCTCCCCCGGCTGCATTAGCCCAAGCCTCCCACCACCTCCTCTGAGGCTGATCAAGAACTCGGTGGAGACCTCCTCCAACTCTCACCTCTCCCAGCCAGGAGCCAAATCAAGTCCTTCCTCACAGTTGCTCCTCCAGCCCAAAGTAGAGCCTTTAACTCAGCACGAGATGAAGACACAACTGGAGCAGGACAGCATTATTGAAGCTCTCCTGCCTCTGAACATGGAAGCCAAGATCAAGCAAGAGGTGACAGAAGGGGACCTCAAAGCCATCATTGCAGGGGCAGCAAACAAGAAAGCCCCAACAATGAGGAAAGTCTTGTACCCCTGTCGTTTCTGTGACCAGGTGTTTGCTTTCTCTGGTGTCCTGAGAGCTCATATCCGTTCTCACTTGGGTATTTCCCCATACCAGTGCAACATCTGTGACTACATTGCAGCTGACAAGGCGGCGCTGATCCGGCACCTGCGGACACACAGTGGGGAGAGGCCTTATATTTGTAAAATCTGCCACTACCCTTTCACAGTTAAAGCCAACTGCGAGAGGCATCTGCGAAAGAAGCACCTCAAAGTGACCAGAAAGGATATAGAGAAGAACATTGAGTATGTCACCAGCAATGCCGCAGAGATGGTGGATGCCTTCTGTTCTCCAGACACTGTGTGCAAGTTGTGCGGCGAGGATCTGAAGCATTACCGGGCCCTCCGCATCCACATGAGGACTCACAGTGGCTGCCAGAAGAAGAAGCCATTTGAGTGCAAGGAGTGTGGCACAGCCTTTTCAGCCAAGAGGAACTGCATTCACCATATCCTGAAGCAGCATTT
Seq C2 exon
GGATGTTTGAACCAGTTCAGAAACAAAGCTAACGCCAGAGAGTCACTCAGAACCAATGATTCACTAAATTCACTACCCAGGTGCATTCTACTTAATTAAAACCAGTTCACGCATCCCTTAAATCGTTATTACTATTATAATTATAATAATAATAATAATTATTATTATTTGGGGTATTTTTTTTTGTTCTCGTCGTTTGTTATTTTGTTTTTTTGGTTTATTCGTTTGTTTTTTTTTTTTTTTAATTTGTTTATTTGGGGTTTTTTTTTTTTTGCAACTCTCCACACTAAACTGCGCAATACTGTGGGGGAGAAGCCATTACTAAACTATATGCTGCAGAACGATGTAGCACGTAATGAATTCCCAGCAGCCTGCCGGGACATCTGCTAGCAATAATCACTATTGAGTTAAAGCTTTATTTAGCCTTTATCTGTATCCTAGTAGAGTATAAGGTCTTGCCACATCTTATTGACATTTTTATTAGTTGAGTTTGACTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799_MULTIEX1-6/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=0.380 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.2),PF0009621=zf-C2H2=WD(100=2.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTCCTGCACCAAATCGG
R:
GCTTCTCCCCCACAGTATTGC
Band lengths:
355-1875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]