DreEX6093713 @ danRer10
Exon Skipping
Gene
ENSDARG00000063701 | rreb1a
Description
ras responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030219-137]
Coordinates
chr24:2357054-2360175:-
Coord C1 exon
chr24:2359986-2360175
Coord A exon
chr24:2357330-2359877
Coord C2 exon
chr24:2357054-2357218
Length
2548 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTTGTCCACAGATT
3' ss Score
13
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATGTGATTTATGCTGCGTCTCCTTCCGGACACCTCGAAGTTTGCTTCGCCACAATGCAGCTACCCATAAGCAGCTACCCACAGACCCCAGTGGACGACCCTTTATTCAGAACAATCCATCCATCCCTCTCGGCTTTAATGATCTGGCTTTCATTGACTTTTCATGCCTCAAGTTCCCTCGTATTGCCCAG
Seq A exon
ATTTGGTGTGAAACAAACCTTCGTCGGTGTACTGGCAAATTCCATCGTTTTGTATGCGACTCGTGCGATAAGGCATTCCCTCTTAGCTCAGCTCTGGACTTACACAAAGCCTCACATGAGGAGTCCAGTGGCACCCAAGAAACAACTTCACCCTTAGTTGAGAAAGACGAGCTTCCCAATGACAAAAGCAGCTTCATGGACTTTCTGGGCTTGCAGCACATCTCTCAGGTCAAGCCTGCCCCTTCTGAAGAGGATGCCCTGCAGGCTAAGCTAGATAGTATCCGGGTTATTCACGTAGAGCCGAATCAGTCCACCGTACCTCAAGAGCCTGGTCTTGTTGGAAGTGTCAACCTATCTCTTGTAGACCCTACGACTCTTCATGGTTTGTCCCACCAAGAGGCTCTCAAACTACTGTCCCTTCAGCCATTCCAGACTGGCTTTCTGGTGCAGCCAGATGGTGGTATGGTGGTGAAGCCTGTTTGTGGTGATACCAGCACAGAACTTGCAGATATACAGCAAATACTCAAAGTAGCTTCTGCTGCTCCAAACCAGATTGCTCTTCCACCTTTATCCAAGGCCCCATGTAGTACTGGACAGTCAGGCTACAAGCAGATGCCTCCACTCAAGCCAAAACCATTGGTGGCCCCCAGAACCAGCATGGTAGCTTCAACTCCACCGCCTCTATTGAACACCCAACAAGCTTCACTGGGCTGTATCAGCCCAAGCCTTCCACCTCCTGCCAGCCATCCCATCAAGGTGGCTAGGGAGAACTCTTCATCTTCCTCGTCCTCTTCTGCCAGTAACCAGGCTTCTGCAGAGAGGATTCAAATGGAGGCGGAGTGCATGGGAGATGCACATACTCCGATGGACATGGATGAAAGACATATCAAGCAGGAGAATAGCAAATTAGAAGAGACCACTGGAAAAAAGGGAACATCTCAAAAAGGCTCATACCCCTGTCGATTTTGTGACCAGGTCTTTGCATTCTCAGGTGTGCTCCAGGCACACATGCGTTATCATTTGGGCGTCCTTCCCCACCAATGTAATATATGTGATTATGTTGCACCAGACAAGGCAACACTGATCCGTCATTTGAGAACACACAGTGGTGAGCGACCCTATGTCTGCCGGCTCTGCCTTTACCCGTTTACAGTCAAGGCTAACTGTGAGCGTCACCTTCGCAAAAAGCACATGAAAAGCAGTCGCAAGGAGATTGAGAAAAACATTAAGTATGTTACCTCGTCCACGTCAACATCAGATGTCGTAGAGCAGGCTGGGACCAGTGAAACTACCTGCCGCTTCTGTGGTGAAGACCTAAAGACCTTTCGGGCCCTGCAGATTCACCTGCGCACACACAATGGCTGCCAGCGAAAGCCATTTGAGTGCAAGCGTTGTGGAGCAGCCTTCCTGGCCAAACGTAACTGCATCCATCATCTTCTGAAGCAACATCCGGAGGTCCAAGAGCAGGATATTGAAGACCACATAATCACTCTTCTAGCTCCATCATCCCAAAATAGCCCAAGCCCATCTCCTCTCAATGGCGTTCCTACTAACAACGTGGTGCAGCCCATCAAGGTGGAGGACCTTAGCTTCTACACTGTAGATATGGATCAACCACTAGACTTTTCTAACAAAAGTCGAGGGGCCAACAACAACAATGCTGGAAGTGTAAGTGGATCGCCTGCGATCAAAATTGAACCTGTCTCTTTTGACTCTTCCATGGAGCCCATTGACCTCTCTATTCCTAAGAATCCTATGAAGAAGCTTAAACAAGACATCGAGGCTGCTTTACCAAGAGCGGTTAAGAAAGAACCTTCATCTGTTAGCATTCTTGCAAAGGCACTTCAGGCTGATAAGTCTATTGATGAAAAGTGCCAACCGCTTGGGTGCTACCAAGTTCCTGTAGCTTTGACGTCTCTTACTGGTAGCACTAGCGCTGCAGGAAGACCCTTGCGTCTAAAACCCCTGCTTCCTAAACCTTCCTCTGCTGGTGTGAAGGAGCTTCCACCCCTAGCATCCATTGCTCAGATCATCTCCTCTGTGTCCGGTGCCCCTGACCTTCTAAAACGTGACAACACTAATAGTCTTAAGACTGATATTGATACACCTGCCAAGCAGGAATCACCAGAGACCCTAAAAGAGGAGCTTTCGGTAGAGATCTCCAAAAAGAGGACTAGGAAAAGGCCTTCCAACGGCATAGCAAAAGAGAAAACCGTGATGAATGCTCCAGACCTGAGTATTGACTTGGAGTCTAGTGGGGAGTTTGCTAGTGTTGAAAGGATGTTGGCAAACACTGATGCTAACAAGTTCAGCGCCTATCTTCAGACCAACACAATCGAGTTGGCAAGAAAAGGCAGGCAGCAGCCAGGTGCTGGTGACGAGAAAGAGATGAAAGATGAGAAACACTTGCCAGTCCAGCAGACTGTTCAACAGTCTAAAGGGAAGAAAAATGCGTACTCAAATTCTGTGCAGAAGATGATTTGCCCATTTTGTCCCAGAGTTTTCCCATGGGCCAGCTCGCTTCAGCGCCACATGCTAACACACACAG
Seq C2 exon
GTCAGAAGCCATATCCTTGCCCCCAATGTGATGCCTTCTTCTCAACCAAATCCAACTGTGAAAGACATCTTTTGCGCAAGCATGGCATTTCCAACCGAGTGCTTAGACGCAATGGTGTAATACCCAAACCTAAGGATGCAGAGGATGGCTCGCCAGAGAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063701-'14-11,'14-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.431 C2=0.643
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=PU(38.5=1.2)
C2:
PF134651=zf-H2C2_2=PD(57.7=26.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]