GgaEX1050334 @ galGal3
Exon Skipping
Gene
ENSGALG00000012799 | RREB1
Description
NA
Coordinates
chr2:65838522-65858029:-
Coord C1 exon
chr2:65857840-65858029
Coord A exon
chr2:65854151-65856890
Coord C2 exon
chr2:65838522-65839268
Length
2740 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGCATGTCTTGCAGGTC
3' ss Score
10.93
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGTGACATCTGTTGTATTACCTTTCGTACTCATCGGGGCTTACTGCGTCATAATGCAGTTATCCATAAGCAGCTTCCCAGAGATCCCACTGGAAAGCCTTTCATTCAGAACAACCCTTCAATTCCAGCAGGCTTCCACGACTTGGGATTCACAGACTTCTCCTGTAGGAAGTTCCCCCGCATTTCTCAG
Seq A exon
GTCTGGTGTGAAACAAATTTGCGAAGGTGCATCAGTGAATTCCATCGGTTTATTTGCGAGACGTGTAACAAGGCATTCCCCATGCTTTTGGCACTCAAACTGCACACAGAAACTCACGTGATGGATCAGGGAAGAGACAAGCACAAGCTACAGTCCACATCCCTACCCAGTGAGAACCCAGACCAGAAAGCCTTCATGGCATCCTTGGGCCTACAGTACACCAAAGACATCAAACCTGTCAAGCAGGAGGACGATACACAAGATGAGGTCCAAGAAATGCGGCTCAGAGCACTGAAGAGTAACCTACCTCAGGAACCCGGCAGCACTGGCCTGCTTAGCCTCTCTCCTCTGGAAGCTGCCACTATGGGGGGGCCATTTTCAGTCCTCCCACCTACAAAGGAGAACATAAAGCTCCTCTCGCTGCAGCCTTTCCAGAAGGGTTTTATCATCCAGCCTGACAGCAGTATTGTGGTAAAACCCATCTCCAATGAATCTGCAATTGAGTTGGCAGACATTCAGCAGATCTTGAAGATGGCTTCTTCCGCTCCTCCTCAAATCAGTCTTCCTCCACTTTCTAAGGCACCTTCTGTCCCTGTGCAGTCCATTTTCAAGCATATGCCACCACTGAAGCCAAAGCCTTTGGTAACGCCCCGAACAGTTGTCGCAACTTCTACACCTCCTCCTCTTATCAGTGCCCAGCAAGCCTCCCCCGGCTGCATTAGCCCAAGCCTCCCACCACCTCCTCTGAGGCTGATCAAGAACTCGGTGGAGACCTCCTCCAACTCTCACCTCTCCCAGCCAGGAGCCAAATCAAGTCCTTCCTCACAGTTGCTCCTCCAGCCCAAAGTAGAGCCTTTAACTCAGCACGAGATGAAGACACAACTGGAGCAGGACAGCATTATTGAAGCTCTCCTGCCTCTGAACATGGAAGCCAAGATCAAGCAAGAGGTGACAGAAGGGGACCTCAAAGCCATCATTGCAGGGGCAGCAAACAAGAAAGCCCCAACAATGAGGAAAGTCTTGTACCCCTGTCGTTTCTGTGACCAGGTGTTTGCTTTCTCTGGTGTCCTGAGAGCTCATATCCGTTCTCACTTGGGTATTTCCCCATACCAGTGCAACATCTGTGACTACATTGCAGCTGACAAGGCGGCGCTGATCCGGCACCTGCGGACACACAGTGGGGAGAGGCCTTATATTTGTAAAATCTGCCACTACCCTTTCACAGTTAAAGCCAACTGCGAGAGGCATCTGCGAAAGAAGCACCTCAAAGTGACCAGAAAGGATATAGAGAAGAACATTGAGTATGTCACCAGCAATGCCGCAGAGATGGTGGATGCCTTCTGTTCTCCAGACACTGTGTGCAAGTTGTGCGGCGAGGATCTGAAGCATTACCGGGCCCTCCGCATCCACATGAGGACTCACAGTGGCTGCCAGAAGAAGAAGCCATTTGAGTGCAAGGAGTGTGGCACAGCCTTTTCAGCCAAGAGGAACTGCATTCACCATATCCTGAAGCAGCATTTGCATGTGCAGGAAAGGGAGATTGAAAATTACATCCTGGTGGTGGACTGCAGTGCTCAGGAGAGCCACACAGATGCTCCTTTATTGGAGGACAGCACTTACATGGACTGCAAGCCCATCACTCCTTTCCTAGAGCCACAAAACGGCTTCTTGCTTGGGACGTCATCTCATGTTCCCATCAAACTTGAACCTATGGGCAACTTCCCGATGGATTTTGATGAGCCGTTGGATTTCTCTCAGAAGAGCAAAAACCTGAGTGCTGTGCAAGTGAAGCAGGAGAACCTGCTTGTCTCTTCTCCCTTGTCCTTCTACGACTGTTCCATGGAGCCCATTGACCTGTCCATCCCCAAAGTCCTGAAGAGAGATAATGATATCCCAGGTGAGGCCAGGAATCAAGAGCTGGCTTCTTCTGTGATCACTGATAATGCCTATAACTGTCAGCAGTGTCCTCTGGGCTTTGGTGCCAATGGGAACTCAGAGAAAAACAGGGCTGTCGGACATCCCCAGCCACTGAAGGGTTCGTTGCATTTGACTGTCCCAATCATTTCCCCAGCTCTCCTTGGCAATTCTGCCTTGCTGAGACCCTTGAGGCCTAAACCACCACCGCAACCTCTCTTGCCAAAGCCTCCAGTAACTAAAGAGCTGCCACCGCTGGCTTCCATTGCACAGATCATTTCATCTGTGTCGTCTGCTCCTGCTTTGCTGAAAACGGAGGCTGCAGATGCCAGTCCCAAGGCAGCGAGCAGCTCCACTGGGTGTGACAAATCAGGGAATGCCAAAGCAAAAATGACAATCGTGACCGCCATTCAGAGAGACTCCAGCCTTCCCAGTGACCTGACTCAGGCCTCTGATCCCGAGCCGTCTCCCATTGCTGACACTGGGTTGACTAAGAAGAGAGGTAGAAAGAAAGGAACAAAAAACAAGCCTAAACTGAGCAGTGGTGTGGATCTGGAGTCAAGCGGGGAGTTTGCCAGCATAGAGAAGATGCTGGCTACCACAGACACTAATAAATTTAGCCCGTTTCTACAGTCCACTGACAATTTCAAGGAAGAAAGCGGCCAAAATGGAACAAGTGAGGATGAAAAGGAAACTCCTGAAGATAAGCTGCTGAGAGGGAAGAGGAACACTTACTCAGACTGCCCGCAAAAAATAACCTGTCCTTACTGTCCTCGAGTCTTTTCGTGGGCAAGTTCCCTACAGCGGCACATGCTCACTCACACAG
Seq C2 exon
ACAGTCAGGCTGACACAGAGGCACCTGCTACAGGAGGTGAAGTCTTGGACCTGACGTCCTGTGAGAAGGAGCAGCCAGAGGAAGTCAGCGAGCTACCAGGGAGTGAGTGCAGCCCCCAGGAGGAGCAAAAGGCTGACTCCCCTCCAGCAGAAGAGGATGCCGAAGAAAAAGCAGATGAATATGAAGAGGGCCCTGAGGAAGATTCTGTAAGTAACAAAAGTCTTGACCTCAATTTTGCCAGCAAGTTAATGGACTTCAAGCTGGCAGAGAGTGACCAGAGCGCAGGCAGCAGTTCTCAGACTGAAAGGAAACATGCCTGTGATGTTTGTGGCAAAACCTTCAAGTTTGCTGGCACTCTTAGCCGTCACAAAAAGGCCCACATTCGTGAGGACAGAAAAGATGAAAGGAGCAGTGAGGATGAAAGCAAAAGCATCCAGGATGATGCAGGAGCTCCCTCGATGCAGGACTCCGGTCTTGAGCAGGAAGAGTCTCCGATGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799-'12-19,'12-14,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.375 C2=0.832
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.2),PF0009621=zf-C2H2=WD(100=2.5)
C2:
PF0009621=zf-C2H2=WD(100=9.2),PF134651=zf-H2C2_2=PU(40.0=4.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]