RnoEX0077192 @ rn6
Exon Skipping
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27543418-27560381:-
Coord C1 exon
chr17:27560192-27560381
Coord A exon
chr17:27556057-27558973
Coord C2 exon
chr17:27543418-27544224
Length
2917 bp
Sequences
Splice sites
3' ss Seq
TGCTTGCGGGTCCCACTTAGGCC
3' ss Score
4.77
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGTGACATTTGCTGTGTCACCTTCCGCACACATCGAGGACTACTGCGTCACAATGCGCTTGTCCACAAGCAGCTTCCCAGAGATGCCATGGGAAGGCCTTTTATCCAGAACAATCCTTCCATTCCTGCTGGCTTCCATGACCTAGGGTTCACCGACTTCTCCTGTAGGAAGTTCCCTCGGATCTCTCAG
Seq A exon
GCCTGGTGTGAAACAAACCTGCGTCGGTGCATCAGCGAGCAGCACCGCTTTGTGTGTGACACCTGCGACAAGGCGTTCCCCATGCTGTCGTCACTCATCCTGCATAGGCAGACCCACATCCCTGCCGATCAGGGACGGGAGAAGCTCCAGACTAAGACCCTGGCTGCTGATACCTTGGACCAGAAGGTCTTCCTGGCCTTCCTAGGCCTGCAGCACACCAAAGACGTGAAGCCTGCACCTGCTGAGGAGCTCCTGCCAGACGACAGCCATACAATACAGCTCCAGACACTCAAGTGTCAGCTACCTCAGGACCCTGGCTGCACCAATGTGCTGAGTCTGTCTCCTTTTGAAGCGGCTTCTTTAGGTGGTTCTCTAACAGTCCTCCCAGCCACAAAGGAGAATATGAAGCATCTGTCCCTGCAGCCCTTCCAGAAGGGCTTCATCATCCAGCCAGACAGTAGTATTGTGGTTAAGCCTATTTCAGGAGAGTCGGCCATTGAGCTGGCAGATATCCAGCAGATTCTAAAGATGGCAGCTTCTGCTCCTCCACAGATCAGTCTTCCGCCACTTTCCAAGGCTCCTGCCACCCCTCTGCAGGCAATTTTCAAGCACATGCCTCCCTTGAAGCCAAAGCCCTTGGTCGCACCCCGGACAGTGGTAGCTGCCTCCACACCCCCTCCTCTCATCAATGCACAGCAGGCATCCCCGGGTTGTATCAGCCCTAGCCTTCCGCCACAGTCCCTGAAGTTCCTCAAGGGGTCTGTGGAGGCAGTCTCCAGTGCCCATCTGCTACAGTCCAAGTCCGGGATCCAGCCAAACACCAGCACACAGCTCTTCCTGCAGCAGCCTGGGGTGGAGTTACCAGGCCAGGCCGAGATGAAAGCCCAGCTGGAGCAGGACAGCATCATTGAGGCCTTGCTGCCCCTAAACATGGAGGCGAAGATCAAGCAGGAGATAACAGAAGGTGACCTCAAGGCCATCATGACAGGCCCCAGTGGCAAGAAGACCCCCGCCATGCGCAAGGTGCTCTACCCCTGCCGCTTCTGTAACCAGGTGTTTGCCTTCTCTGGAGTCCTGCGAGCCCACGTCCGCTCCCACCTGGGCATCTCGCCCTACCAGTGCAACATCTGTGACTACATCGCCGCAGACAAAGCTGCTCTCATCCGCCACCTCCGCACGCACAGCGGGGAGCGGCCGTACATCTGCAAGATCTGCCACTACCCGTTCACCGTCAAAGCCAACTGTGAGCGGCACCTGCGCAAGAAGCACCTCAAGGCCACCAGGAAGGACATTGAGAAGAACATACAGTACGTGAGCAGCAGCACGGCTGAGCTGGTGGATGCCCTCTGCTCCCCGGAGACCGTGTGCAGGCTGTGCGGTGAGGATCTGAAGCACTACCGCGCCCTGCGCATTCACATGCGCACGCACTGCAGCCGTGGCCTGGGTGGCTGCCACAAAGGCCGGAAACCCTTCGAGTGCAAGGAATGCAACGCCGCCTTCGCGGCCAAGCGCAACTGCATCCACCACATCCTCAAGCAGCACCTGCACGTGCCCGAGAAAGACATTGAGAGCTACGTGCTGGCCACCGACGCCGGCCTTGGCCCCGCAGACACGGCCGCAGAGGCCTCTTCCAGAGAAGAGAGCAGCTGTGTCACTTTCGCCGAGTGCAAGCCCCTCACCACTTTCCTGGAGCCCCAAAATGGCTTTCTTCACTCGAGCCCCACCCAGCCCCTGCCTTCCCACATCTCTGTCAAGTTGGAGCCGGCCAGCAGCTTTGCAACAGACTTCAACGAACCCCTTGACTTTTCGCAGAAAGGCCTGGCACTGGTCCAAGTGAAGCAGGAAAATATGTCCTCCTTGCTGAATTCTTCCTCCTCCTCTGCCCTCTATGACTGCTCCATGGAGCCCATTGATCTGTCCATCCCCAAGAGCGGAAAGAGAGGAGACAAGGACACAGTTGTTTCCAGCGACGCCAAGAAACCAGAACCAGAAGCTGGGAAAGCTGAGCAGCTCTCTCCCCATCCGCCACCCTGCCCTACCTTGTCAGTGACTGTGGAGCCCAAAGGGAGCCTGGACAACCCAGCAGGCACTGTGGTGGCCGTCACCACGGCTGCCAAGCTGGAGCCCCACACCCAGCCCCTCCAGGGCTCTGTGCAGCTGGCTGTCCCCATCTACTCCTCAGCTCTCATCAGCAATGCTCCCCTCTTGGGCAGCTCCGCCCTCCTGAACAGCGCGTCCTTGCTTCGGCCCTTACGGCCAAAGCCTCCCCTCCTCTTGCCAAAGCCCGCGATGACAGAGGAGCTGCCGCCACTGGCCTCCATTGCGCAGATCATCTCCTCTGTGTCCTCGGCTCCTACTCTGCTGAAAACGAAGGCAGCTGACCCCGGGCCGTCGAGCACCAGCAGTAACGCTGTGGCCACAGACAGCCCAGGAGGCTCCATCCCCAAGGCCTCCCCTAGCCCCACAGACATCCCAAGCTCGAGAGAACCCACTGACCCAGCCCCTACAGCCAGCAGCCCCGAGGAAGCCTCGCCTCCTGAACAAGGGCCGGCTGCCTCATCCAGGAAGAGGGGCAGGAAAAGGGGAATGAGAAACCGACCCCTCCCCAACAGCAGTGCTGTGGACCTGGACTCCAGTGGGGAGTTTGCCAGCATCGAGAAGATGCTGGCCACCACAGACACCAACAAGTTCAGTCCGTTCCTGCAGACGGCAGAGGACACTCAGGAAGAGGTGGCTGGAACCCCTGCAGACCACCGCGGGCCCACTGAGGAGGAGCAAGGCAGCTCTGCGGAGGACAGGCTGCTGAGAGCAAAGCGGAACTCCTATGCCAACTGCCTGCAGAAGATCAACTGTCCCCACTGTCCCCGGGTCTTCCCTTGGGCCAGCTCCCTGCAGAGGCACATGCTTACACACACTG
Seq C2 exon
ACAGCCAGTCAGACACAGACACACTGACCACCCCAGGTGAGGTGCTGGATCTCACAGCACGGGACAAAGAGCAGCCAACATCAGAGGGAGCCAGTGAGCTCAGCCCAGCTACGCAGGACCTTACAGAAACAGAGGCCAAGGCAGAAGCAGCCCCACCTGAGGAGGAGGAGGAGGAAAAGGGGACGGAGGAGAACCCAGAACCAGAGTTAGAGTGCCGCGTGGAAGAGAGCTCTGGGGATGCAGACGCCCCGGAGGAAGACACAGCCAGCAACCAGAGCCTGGATCTTGACTTCGCCACCAAGATGATGGACTTCAAGCTGGCCGAGAGTGAGGCAGGTGCTGTGGACAGCCAAGGCCCGGCCCAGCAGGAGCCGAAGCATGCCTGCAATACCTGTGGGAAGAACTTCAAGTTCCTGAGCACCCTAAGTCGCCACAGGAAGGCGCACGGCTGCCAGGAGCCCAAGGAGGAGGAGGAGGCGCCTTCGCTGGAGAATGAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.356 C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
PF139121=zf-C2H2_6=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=PU(38.5=1.0)
C2:
PF0009621=zf-C2H2=WD(100=8.5),PF134651=zf-H2C2_2=PU(40.0=3.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]