DreEX0064384 @ danRer10
Exon Skipping
Gene
ENSDARG00000010425 | scara5
Description
scavenger receptor class A, member 5 (putative) [Source:ZFIN;Acc:ZDB-GENE-041210-258]
Coordinates
chr20:1351118-1357698:-
Coord C1 exon
chr20:1357574-1357698
Coord A exon
chr20:1354383-1354514
Coord C2 exon
chr20:1351118-1351303
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCCGTGCTTGTGTTTTACAGTAA
3' ss Score
8.59
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGGGCTGTGAATGGAGAATAGGGCGATGTACCTAACCACCACCCATGAGGACCGGGAGAACAGCTCTTTCTATGAGGAAAGCTATGATGGCATGAATCTGTCCAAACTCAACCTGTGTGAAGAAG
Seq A exon
TAAATTCTACAAAGTACAGGAGAAAGACTGATAATCGCTGTGGACAGTTGGATTCTCTCACTTCAATCAAATATGCCATCGTGTCGCTTTATATTCTGGTGCTGCTCACCATATTCGGCCTCTGCATAGCAG
Seq C2 exon
TATCAAAAAGCCATGCGTCCTGGAGACGTGAGGAAGCACTTCTGGAGAATGTGACGCGGCTAGGGGAGCAGTCGGAGACCCTGCAGATGTCTCTCAGCCAGATCCCGTCCCAGAGCGACCTTCTGGAGAACATCTGGAAGCTGGAGAGCCTCTTTCACAACCACACTGAACAGCTGAGGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010425-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAACCACCACCCATGAGGA
R:
TGTGAAAGAGGCTCTCCAGCT
Band lengths:
254-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]