MmuEX6042159 @ mm10
Exon Skipping
Gene
ENSMUSG00000022032 | Scara5
Description
scavenger receptor class A, member 5 [Source:MGI Symbol;Acc:MGI:1918395]
Coordinates
chr14:65670557-65731195:+
Coord C1 exon
chr14:65670557-65670674
Coord A exon
chr14:65689768-65689896
Coord C2 exon
chr14:65730521-65731195
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTCTCCTCTTTTAGGTC
3' ss Score
12.75
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GATACGATGGACAACAAAGCCATGTACCTGCACACCGTGAGTGACCGTGACAACGGCTCCATCTTTGAAGAACCCTTTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGAGGATG
Seq A exon
GTCCATGTCACAAACGGCGGGCGGGAGGCTGCTGTACACAGCTGGGCTCCCTCTCAGCGCTGAAGCATGCAGTCCTGGGGCTGTATCTTCTGGTCTTCCTGATTCTTGTGGGTATCTTCATCTTAGCAG
Seq C2 exon
TGTCCCGGCCTCGAAGCTCCCCAGATGACTTGAAGGCGCTGACTCGGAACGTCAACCGGCTGAATGAGAGCCTCCGGGACATGCAGCTGCGGCTGCTGCAGGCTCCATTGCAGGCAGACCTGACAGAGCAGGTGTGGAAGGTTCAGGATGCGCTGCAGAACCAGACAGACTCGTTGTTGGCCCTGGCCGGCTTGGTGCAGAGGCTGGAGGGCACGCTGTGGGGGCTGCACGCGCAGGCGGCACAGACTGAGCAGGCGATGGCCCTGCTGCGGGACCGAACAGGACAGCAGAGTGACTCCGCACAGCTGGAACTCTACCAGCTGCAGGTGGAAAGCAATCGAAGCCAGCTACTGCTGCAGCGCCACGCGGGCCTGCTGGATGGGCTAGCACGCAGGGTGGGGGTCCTGGGGGAGGAGCTGGCTGACGTGGGCGGTGCGCTCCGTGGTCTCAACCACAGCCTGTCCTATGACGTGGCCCTGCACAGCACGTGGCTACAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022032-'4-13,'4-7,8-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(3.7=0.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACAACGGCTCCATCTTT
R:
GAGTCTGTCTGGTTCTGCAGC
Band lengths:
245-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types