GgaEX0024552 @ galGal4
Exon Skipping
Gene
ENSGALG00000016580 | SCARA5
Description
scavenger receptor class A, member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
Coordinates
chr3:104760512-104767742:+
Coord C1 exon
chr3:104760512-104760634
Coord A exon
chr3:104762791-104762919
Coord C2 exon
chr3:104767068-104767742
Length
129 bp
Sequences
Splice sites
3' ss Seq
GACGCCCACTCTGTCCCCAGGTG
3' ss Score
11.97
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAGCGGGAGGATGGAGAACAAGGCCATGTACCTGCACACCTTCAGCGAGAGGGAGAACGGCTCCATCTTCGAGGAGCCCTTCGAGGGCAGGAACCTCTCCAAGCTGAACCTCTGCGAGGACG
Seq A exon
GTGCTGGGCACAGGATGAAGGCAGCCGGGCGCTGCGGGCGGCTGGGCTCCCTGGCAGCACTCAAGTATGCGGTGCTGGGGCTCTACCTCCTCGTCTTCCTCATCCTCGTCGGCGTCTTCATCCTCGCAG
Seq C2 exon
TCTCCCGGCCTCAGACTTCCCCTGAGGACCTGAAGGCATTGATGGGGAATGTGAACCGCCTCAATGAGAGTTTCCGGGACATGCAACTGAAGCTGCTGCACCTCCCTCTGAAGGGGGATGTGATGGATCACATCTGGAGGCTCCAGGACCTTCTCCAGAACCATTCAGACTCCTTGTTCCTCATGACGGGCTCGCTGCAGAAGCTGGAAGGCCTCCTGTGGAGCCTGCAGACCCAGGCTGGCCAAACCAATAGGGCCGTGGCCAACCTGTGGGACAGCCTGGCCCAGCAGGGCGATGCAGCCCAGCAGGAGCTCTACAAGCTCTCGGTGGAAGGCAACAACAGCCGGCTGCTGCTGCAACACCACGAGCACCTCTTGAGCCACTTGGGCAGCCGGCTGGAGGGCCTGAGCGAGCAGGTGACAGCCGTCAGTGGAGCTGCCGATGCCATGAACAGGACCTTCTCCTATGATGTCAACATCCACCACAGCCGTATCCAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016580_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(3.8=0.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCTTCGAGGAGCCCTTC
R:
GAGCCCGTCATGAGGAACAAG
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]