HsaEX0056414 @ hg19
Exon Skipping
Gene
ENSG00000168079 | SCARA5
Description
scavenger receptor class A, member 5 (putative) [Source:HGNC Symbol;Acc:28701]
Coordinates
chr8:27779088-27845147:-
Coord C1 exon
chr8:27845021-27845147
Coord A exon
chr8:27823931-27824059
Coord C2 exon
chr8:27779088-27779762
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTTACCCTTATTGTCCAGGTC
3' ss Score
8.72
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTGTTGCAGGGTGTGATGGAGAACAAAGCTATGTACCTACACACCGTCAGCGACTGTGACACCAGCTCCATCTGTGAGGATTCCTTTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGAGGATG
Seq A exon
GTCCATGTCACAAACGGCGGGCAAGCATCTGCTGTACCCAGCTGGGGTCCCTGTCGGCCCTGAAGCATGCTGTCCTGGGGCTCTACCTGCTGGTCTTCCTGATTCTTGTGGGCATCTTCATCTTAGCAG
Seq C2 exon
TGTCCAGGCCGCGCAGCTCCCCTGACGACCTGAAGGCCCTGACTCGCAATGTGAACCGGCTGAATGAGAGCTTCCGGGACTTGCAGCTGCGGCTGCTGCAGGCTCCGCTGCAAGCGGACCTGACGGAGCAGGTGTGGAAGGTGCAGGACGCGCTGCAGAACCAGTCAGACTCGTTGCTGGCGCTGGCGGGCGCAGTGCAGCGGCTGGAGGGCGCGCTGTGGGGGCTGCAGGCGCAGGCGGTGCAGACCGAGCAGGCGGTGGCCCTGCTGCGGGACCGCACGGGCCAGCAGAGCGACACGGCGCAGCTGGAGCTCTACCAGCTGCAGGTGGAGAGCAACAGTAGCCAGCTGCTGCTGAGGCGCCACGCGGGCCTGCTGGACGGGCTGGCGCGCAGGGTGGGCATCCTGGGCGAGGAGCTGGCCGACGTGGGCGGCGTGCTGCGCGGCCTCAACCACAGCCTGTCCTACGACGTGGCCCTCCACCGCACGCGGCTGCAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168079-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(3.7=4.5)
C2:
PF129112=OppC_N=PD(42.6=8.8),PF0139113=Collagen=PU(3.6=0.9)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACACCAGCTCCATCTGTG
R:
GAGTCTGACTGGTTCTGCAGC
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)