RnoEX0078351 @ rn6
Exon Skipping
Gene
ENSRNOG00000014398 | Scara5
Description
scavenger receptor class A, member 5 [Source:RGD Symbol;Acc:1306539]
Coordinates
chr15:49083530-49143650:+
Coord C1 exon
chr15:49083530-49083647
Coord A exon
chr15:49101752-49101880
Coord C2 exon
chr15:49142976-49143650
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTTTCCTTTTATAGGTC
3' ss Score
12.54
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTATGATGGACAACAAAGCCATGTACCTGCATACTGTGAGTGACCGTGACAACGGCTCCATCTTTGAGGAACCCTTTGATGGCAGGAGCCTGTCCAAACTGAACCTGTGTGAGGATG
Seq A exon
GTCCATGTCACAAGCGGCGGGCGGGTGGCTGCTGCACACAGCTGGGCTCCCTGTCAGCGCTGAAGCATGCGGTCCTGGGGCTGTATCTTCTGGTCTTCCTGACTCTTGTGGGTGTCTTCATCTTAGCAG
Seq C2 exon
TGTCCCGGCCTCGCAGCTCCCCAGATGACTTGAAGGCGCTGACTAGGAACATCAACCGGCTGAATGAAAGCTTCCGGGACATGCAGCTACGGCTGCTGCAGGCTCCGTTGCAGGCAGACCTGACGGAACAGGTGTGGAAGGTTCAGGATGCACTGCAGAACCAGACAGACTCACTGTTGGCCCTGGCAGGCTTGGTGCAGAGACTGGAGGGCACACTGTGGGGGCTGCACGCGCAGGCTGCACAGACTGAGCAGGCGGTGGCCCTGCTGCGTGACCGAACAGGACAGCAGAGCGACTCCGCACAGCTGGAACTCTACCAGTTGCAGGTGGAAAGCAATCGAAGCCAGCTGCTGCTGCAGCGGCACGCAGGCCTGCTGGATGGGCTAGCACACAGGGTGGGGGTCCTGGGCGAGGAGCTGGCTGATGTGGGTGGTGCACTTCGTGGCCTCAACCACAGCCTATCCTATGACGTGGCTCTGCACAGCACGTGGCTACAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014398-'1-5,'1-1,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(2.5=0.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCATACTGTGAGTGACCG
R:
CTGCAGTGCATCCTGAACCTT
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]