HsaEX0056414 @ hg38
Exon Skipping
Gene
ENSG00000168079 | SCARA5
Description
scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
Coordinates
chr8:27921571-27987630:-
Coord C1 exon
chr8:27987504-27987630
Coord A exon
chr8:27966414-27966542
Coord C2 exon
chr8:27921571-27922245
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTTACCCTTATTGTCCAGGTC
3' ss Score
8.72
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTGTTGCAGGGTGTGATGGAGAACAAAGCTATGTACCTACACACCGTCAGCGACTGTGACACCAGCTCCATCTGTGAGGATTCCTTTGATGGCAGGAGCCTGTCCAAGCTGAACCTGTGTGAGGATG
Seq A exon
GTCCATGTCACAAACGGCGGGCAAGCATCTGCTGTACCCAGCTGGGGTCCCTGTCGGCCCTGAAGCATGCTGTCCTGGGGCTCTACCTGCTGGTCTTCCTGATTCTTGTGGGCATCTTCATCTTAGCAG
Seq C2 exon
TGTCCAGGCCGCGCAGCTCCCCTGACGACCTGAAGGCCCTGACTCGCAATGTGAACCGGCTGAATGAGAGCTTCCGGGACTTGCAGCTGCGGCTGCTGCAGGCTCCGCTGCAAGCGGACCTGACGGAGCAGGTGTGGAAGGTGCAGGACGCGCTGCAGAACCAGTCAGACTCGTTGCTGGCGCTGGCGGGCGCAGTGCAGCGGCTGGAGGGCGCGCTGTGGGGGCTGCAGGCGCAGGCGGTGCAGACCGAGCAGGCGGTGGCCCTGCTGCGGGACCGCACGGGCCAGCAGAGCGACACGGCGCAGCTGGAGCTCTACCAGCTGCAGGTGGAGAGCAACAGTAGCCAGCTGCTGCTGAGGCGCCACGCGGGCCTGCTGGACGGGCTGGCGCGCAGGGTGGGCATCCTGGGCGAGGAGCTGGCCGACGTGGGCGGCGTGCTGCGCGGCCTCAACCACAGCCTGTCCTACGACGTGGCCCTCCACCGCACGCGGCTGCAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168079-'2-13,'2-4,6-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(3.7=4.5)
C2:
PF0139113=Collagen=PU(3.6=0.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACACCAGCTCCATCTGTG
R:
GAGTCTGACTGGTTCTGCAGC
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development