DreEX0064399 @ danRer10
Exon Skipping
Gene
ENSDARG00000098312 | scarb2
Description
scavenger receptor class B, member 2 [Source:ZFIN;Acc:ZDB-GENE-020419-29]
Coordinates
chr5:52203774-52205090:+
Coord C1 exon
chr5:52203774-52203921
Coord A exon
chr5:52204178-52204372
Coord C2 exon
chr5:52204999-52205090
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTTTTTTTTTAGGCA
3' ss Score
12.04
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GGAATATCGACCAAGAGAAAATGTGACTTATCTTGAGAATGGGACAAAGATTTTTGCCACAAATCCCAAGAGCTTTGTGTTTCTTCGCAACATGTCAGCTGGAGATCCTGAGGTTGACCGTGTGACAACCGTTAATATTCCAATGATT
Seq A exon
GCAGTGATGAATGAGTTAAACTCCTACTCCTTCTTTGTGAGGACAGCTGTATCTATGTATATGGGGTCCATGGGCATGGGCCTGTTTATGAATCGTACAGTTCATGAGATCCTGTGGGGTTTCAAAGATCCACTTCTGACCAAACTCCACGCCATGAGACCAGAAGTGGATGAGCATTTTGGCCTCATGTACAAT
Seq C2 exon
AAAAATGGAACCCATGAAGGTGAATTTGTCTTCCACACTGGAGAGAAGAATTACATGAACTATGGCAAGATTGATACGTGGAACGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098312_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.7=100)
A:
PF0113016=CD36=FE(14.0=100)
C2:
PF0113016=CD36=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCAAGAGAAAATGTGACT
R:
CTGATGCCGTTCCACGTATCA
Band lengths:
234-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]