RnoEX6041770 @ rn6
Exon Skipping
Gene
ENSRNOG00000002225 | Scarb2
Description
scavenger receptor class B, member 2 [Source:RGD Symbol;Acc:621882]
Coordinates
chr14:17098809-17101899:+
Coord C1 exon
chr14:17098809-17098956
Coord A exon
chr14:17100988-17101176
Coord C2 exon
chr14:17101808-17101899
Length
189 bp
Sequences
Splice sites
3' ss Seq
AACCTGCCTCTACTCTGCAGACT
3' ss Score
7.21
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAGCTCAGGAACAAGGCAAACGTTCAGTTTGGAGAAAATGGAACAACCATATCTGCCGTCACCAATAAGGCATATATTTTTGAACGAAACCAGTCTGTTGGAGACCCTACCGTTGACTTGATTAGAACAATAAATATTCCTCTGTTG
Seq A exon
ACTGTTGTGGAAATGGCCCAGCAGCCCTTCCTCAGGGAGATCATCGAGGCCATGCTGAAAGCTTATCAGCAGACGCTGTTTGTCACTCACACTGTACATGAACTGCTCTGGGGCTACAAAGATGAGGTCTTGTCGCTCGTCCATATTTTCAGACCTGACGTCTCCCCTAACTTTGGCCTGTTCTATGAG
Seq C2 exon
AGAAATGGAACTAATGATGGGGAGTATGTTTTTCTGACTGGAGAGGACAATTACCTGAACTTTACAAAAATTGTGGAGTGGAATGGAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002225-'2-9,'2-7,3-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.9=100)
A:
PF0113016=CD36=FE(13.8=100)
C2:
PF0113016=CD36=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCAGGAACAAGGCAAA
R:
GTTTTTCCATTCCACTCCACAA
Band lengths:
240-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]