GgaEX1051063 @ galGal3
Exon Skipping
Gene
ENSGALG00000011499 | SCARB2
Description
NA
Coordinates
chr4:51420790-51423317:+
Coord C1 exon
chr4:51420790-51420937
Coord A exon
chr4:51422291-51422479
Coord C2 exon
chr4:51423226-51423317
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGATTCTAATCCCCTGGTAGACT
3' ss Score
5.13
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AGAATACAGGCCGAGAGTGCATGTTCAGTTTTTGGATAATGGCACCAAAGTATCTGCTCTGAATCCAAAGACGTATGTATTTGAACCTGAGAAGTCAGTTGGAAACCCTGAAGTGGATTTGATTAGAACCATCAATGTTCCTGCAGTG
Seq A exon
ACTGCAATGGAGTGGACCAGGGCAACTTCTCTTCAGTTTGCCACGGAGGTGCTATTGCTCCTATACCAAGAATCCCTGTTTACAGTTCGCACAGTGCATGAATTACTGTGGGGCTACAAAGACAAACTCCTGTCAACCATTCATGTTTTGCATCCTGAAATCGATCCAGTGTTTGGCTTCTTTAATAAG
Seq C2 exon
ATGAATGGAACTGATGATGGCGAATATGTTTTCCTAAGTGGAGAAATGAACTACCTTAACTTCTCAAGAATTGTGGAATGGAAAGGAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011499-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.8=100)
A:
PF0113016=CD36=FE(13.7=100)
C2:
PF0113016=CD36=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATACAGGCCGAGAGTGCA
R:
TCCTTTCCATTCCACAATTCTTGAGA
Band lengths:
235-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]