HsaEX0056423 @ hg38
Exon Skipping
Gene
ENSG00000138760 | SCARB2
Description
scavenger receptor class B member 2 [Source:HGNC Symbol;Acc:HGNC:1665]
Coordinates
chr4:76176437-76181101:-
Coord C1 exon
chr4:76180954-76181101
Coord A exon
chr4:76179517-76179705
Coord C2 exon
chr4:76176437-76176528
Length
189 bp
Sequences
Splice sites
3' ss Seq
AATATACCTCTGCTCCGCAGACT
3' ss Score
7.61
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAACTCAGAAACAAAGCAAATATTCAATTTGGAGATAATGGAACAACAATATCTGCTGTTAGCAACAAGGCCTATGTTTTTGAACGAGACCAATCTGTTGGAGACCCTAAAATTGACTTAATTAGAACATTAAATATTCCTGTATTG
Seq A exon
ACTGTCATAGAGTGGTCCCAGGTGCACTTCCTCAGGGAGATCATCGAGGCCATGTTGAAAGCCTATCAGCAGAAGCTCTTTGTGACTCACACAGTTGACGAATTGCTCTGGGGCTACAAAGATGAAATCTTGTCCCTTATCCATGTTTTCAGGCCCGATATCTCTCCCTATTTTGGCCTATTCTATGAG
Seq C2 exon
AAAAATGGGACTAATGATGGAGACTATGTTTTTCTAACTGGAGAAGACAGTTACCTTAACTTTACAAAAATTGTGGAATGGAATGGGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138760_MULTIEX1-3/6=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.9=100)
A:
PF0113016=CD36=PD(8.5=70.6)
C2:
PF0113016=CD36=FE(12.8=100),PF0113016=CD36=PU(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCAGAAACAAAGCAAATATTC
R:
GTTTTCCCATTCCATTCCACAA
Band lengths:
240-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development