MmuEX6018867 @ mm9
Exon Skipping
Gene
ENSMUSG00000029426 | Scarb2
Description
scavenger receptor class B, member 2 [Source:MGI Symbol;Acc:MGI:1196458]
Coordinates
chr5:92889068-92891110:-
Coord C1 exon
chr5:92890963-92891110
Coord A exon
chr5:92889780-92889968
Coord C2 exon
chr5:92889068-92889159
Length
189 bp
Sequences
Splice sites
3' ss Seq
AACCTGCCTCTGCTCTGCAGACT
3' ss Score
7.7
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAGCTCCGGAACAAGGCAAATATTCAGTTTGGAGAAAATGGAACAACTATATCTGCTGTCACCAATAAGGCATATGTTTTTGAACGAAACCAATCTGTTGGAGATCCTAACGTTGACTTGATTAGAACAATAAATATTCCTCTGTTG
Seq A exon
ACTGTCGTGGATCTGGCCCAGCTGACCCTGCTCAGGGAGCTTATCGAAGCCATGCTGAAAGCCTATCAGCAGAAGTTGTTTGTGATTCACACCGTGCACGAACTGCTCTGGGGCTACAAAGATGAGATCTTGTCCCTCGTCCATATTTTCAAACCTGACGTCTCCCCGAATTTCGGCCTGTTCTATGAG
Seq C2 exon
AGAAATGGAACGAATGACGGGGAGTACGTGTTTCTGACTGGAGAGGACAATTACCTTAACTTTTCAAAAATCGTGGAGTGGAATGGAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029426-'5-3,'5-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.9=100)
A:
PF0113016=CD36=FE(13.8=100)
C2:
PF0113016=CD36=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCGGAACAAGGCAAAT
R:
GTTTTTCCATTCCACTCCACGA
Band lengths:
239-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: