BtaEX6031866 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010956 | SCARB2
Description
Bos taurus scavenger receptor class B, member 2 (SCARB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102153]
Coordinates
chr6:92824490-92833387:-
Coord C1 exon
chr6:92833240-92833387
Coord A exon
chr6:92830824-92831012
Coord C2 exon
chr6:92824490-92824581
Length
189 bp
Sequences
Splice sites
3' ss Seq
AATTTGCCTGTGCTCCTCAGACC
3' ss Score
6.27
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGAACTCAGAAACAAGGACGATATTCAATTTGGAGATAATGGAACAACAATATCTGCTGTGAGCAACAAGGCCTATGTTTTTGAACGAGACAAATCTGTTGGAGACCCAAAAATTGACTTACTTAGAACATTAAATATTCCTGCATTG
Seq A exon
ACCGCCATGGAATGGACCCAGCTGCCCTTACTTCGGGATATCATCGAGGCCCTGCTGAAGGCCTACCGGCAGAAGCTCTTTGTGACCCACACTGTGGATGAACTGCTCTGGGGTTACAAAGATGAAATCTTATCCCTCATCAACACTTTCAAACACGACGTCTCTCCCTATTTTGGCCTGTTTTATGGG
Seq C2 exon
AAAAATGGGACTAATGATGGAGATTATGTTTTTCTAACTGGAGAAGACAATTACCTTAACTTTTCCAAGATTGTGGAATGGAATGGGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010956-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.9=100)
A:
PF0113016=CD36=FE(13.8=100)
C2:
PF0113016=CD36=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCAGAAACAAGGACGA
R:
CCCATTCCATTCCACAATCTTGGA
Band lengths:
235-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]