DreEX0064566 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40171183-40178275:+
Coord C1 exon
chr24:40171183-40171276
Coord A exon
chr24:40175676-40176085
Coord C2 exon
chr24:40178039-40178275
Length
410 bp
Sequences
Splice sites
3' ss Seq
CTTAATGTCTCCATCCGCAGCTC
3' ss Score
8.72
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACGACGCATGTATTTCTCCATCTCAGTGTCCATGTGAGTGGGACGGCTCTGTGTTTCCAGCAGGAGCGATGGTCACTCAACATTGTCAGAACTG
Seq A exon
CTCTTGCTCTGCTGGTTTGTGGCAGTGTGTTGGATCTCCGTGTCCTCCTCCGTCTCCCTGTAAGGACTCAGAGTTTCGCTGTTCTGGTGGATCTGAGCGCTGTATTCCTGCAGTGTGGGTCTGTGATAATGAAGACGACTGCGGGGACGGTTCTGATGAGGTCTGTCCAATCACCTGTCCTCCTGAACACTTCCGCTGCTCTGGCGGAGCATGTTTACCTGTGGAGCTCAGGTGTGATGGACATCCAGACTGCGCCGACCAATCAGACGAGGACTTCTGTCCTCCGAGCACACCTGAGTCTGGCTGTCCCTCCGGAGAGTTCAGATGTGCAAATGGACGCTGTGTGCCGGGGCATAAAGTCTGTGATGGGAGGATGGATTGTGGATTTGCTGATGACTCTGATGAATATG
Seq C2 exon
ACTGTGGCGTGGTGTGTCGGCAGGAGGAGTTTCGCTGTTCCTCCGGTCGCTGTGTGCTGTTTCTGCACCGCTGTGATGGTCACGATGACTGCGGAGATTACAGTGATGAGCGAGGGTGTGTGTGTGCTCTCGGAGAGCTCCAGTGTCCGGGAGATCAGTGTGTGTCTGCAGAGAGAGTGTGTGATGGAAACAGAGACTGTCCATCCGGCATCGATGAGCTCATCTGTCCTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'26-30,'26-29,27-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(15.8=28.1)
A:
PF0005713=Ldl_recept_a=WD(100=27.5),PF0005713=Ldl_recept_a=WD(100=26.8),PF0005713=Ldl_recept_a=PU(94.9=26.8)
C2:
PF0005713=Ldl_recept_a=PD(2.6=1.2),PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=WD(100=45.0),PF0005713=Ldl_recept_a=PU(2.7=1.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACGCATGTATTTCTCCATCT
R:
TGGCAGGACAGATGAGCTCAT
Band lengths:
328-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]