GgaEX7001552 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:416681-417610:+
Coord C1 exon
chr2:416681-416774
Coord A exon
chr2:416858-417258
Coord C2 exon
chr2:417380-417610
Length
401 bp
Sequences
Splice sites
3' ss Seq
TAACTGCAGCCGCCCTGCAGCTC
3' ss Score
2.74
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AGGGCAGCTGTATCGACCCCGCCGAGTGCCCGTGCTTCTGGCAGGGCATCGCCTTCCCAGACAGCGCTGTGGTGCAGCAGGGCTGCAGGAACTG
Seq A exon
CTCATGCACCGCAGGGCTGTGGCAATGCGTGCCCACGGCAGAGCCCTGCCCAGCACAGCCCCACTGCCCTGACTCGGAGTTCCCGTGCCGCTCTGGCGGGCGCTGCGTGCCGGGCGCATGGCTCTGCGACAACGAGGACGACTGCGGGGACGGCTCGGATGAGGTCTGTGCCCTGCACTGCGCCCCGCACCAACACCGCTGCGCTGACGGGCAGTGCGTGCCCTGGGGTGCCCGCTGTGATGGTTTGTCTGACTGCGGGGACGGCTCGGATGAGCGCGGCTGCCCACCCCCCCCCTGCGCCCCACCGGAGTTCCGCTGCGCCAGCGGCCGCTGCATCCCACGGGCACATGTCTGCAATGGGGAGCTGGACTGCGGCTTCGCTGATGACTCAGATGAGGCAG
Seq C2 exon
GCTGCAGTCCAAGCTGCAGTGCGGGTGAGTTCCAGTGTGCGGCGGGACGCTGCGTGCCATACCCACACCGCTGCAATGGACACGACGACTGCGGGGACTTCAGCGATGAGCGGGGCTGCGTCTGCCCAGCCGGCCACTTCCAGTGCCCTGATGCACAGTGCCTGCCCCCGGCTGCCCTCTGTGATGGGATGCAGGACTGCGGGGATGGCACCGATGAGGCGTTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(16.1=28.1)
A:
PF0005713=Ldl_recept_a=WD(100=27.4),PF0005713=Ldl_recept_a=WD(100=27.4),PF0005713=Ldl_recept_a=PU(94.9=27.4)
C2:
PF0005713=Ldl_recept_a=PD(2.6=1.3),PF0005713=Ldl_recept_a=WD(100=47.4),PF0005713=Ldl_recept_a=WD(100=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAGCTGTATCGACCC
R:
GCAGAACGCCTCATCGGT
Band lengths:
321-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]