BtaEX6029427 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113450733-113451516:+
Coord C1 exon
chr4:113450733-113450829
Coord A exon
chr4:113450914-113451083
Coord C2 exon
chr4:113451283-113451516
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCCGGACGCCCTGTCCTCAGCAC
3' ss Score
5.17
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GAGGTGTCTGCTTGGAGCCGGCTGCCTGCCCCTGCGAGTGGGGGGGCAGCTTCTTCCCACCGGGCACGGTGCTGCAGAAGGACTGTGGCAACAACTG
Seq A exon
CACGTGTCGGGAAAGTCAGTGGCTTTGTGGGGACGATGGCGGCCGCTGTGTGGAGCCCGGGCCTGGTTGTGCGGAGGGAGAGACCCCATGCCGCGAGAGCGGGCACTGTGTGCCCCACGGGTGGCTCTGTGACAACCAGGATGACTGTGGCGATGGCTCAGACGAGGAGG
Seq C2 exon
GCTGTGCCACCCCGGTCTGTGGCGAGGGGCAGGTGTCTTGCAGCTCCGGCCGCTGCCTGCCCCTGGTCCTGCTCTGTGATGGGCAGGACGACTGTGGAGACGGGATGGATGAGCAGGGCTGCCCGTGCCCCCAGGACTCGCTGACCTGTGCCGACGGGCACTGCCTGCCCCCGGCCCGGCTCTGTGACGGGCACCCCGACTGTCCGGATGGTGCTGACGAGGAGTCTTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'35-36,'35-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(15.8=27.3)
A:
PF0005713=Ldl_recept_a=PU(94.7=62.1)
C2:
PF0005713=Ldl_recept_a=PD(2.6=1.3),PF0005713=Ldl_recept_a=WD(100=46.8),PF0005713=Ldl_recept_a=WD(100=45.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGCAGAAGGACTGTG
R:
AAGACTCCTCGTCAGCACCAT
Band lengths:
258-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]