HsaEX0061896 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149788567-149789398:+
Coord C1 exon
chr7:149788567-149788660
Coord A exon
chr7:149788752-149788921
Coord C2 exon
chr7:149789165-149789398
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCAGGACGCTGTGTGCTCAGCAC
3' ss Score
0.94
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GAGGAGCCTGCTTGGAGCCAGCTTCCTGCCCCTGTGAGTGGGGCCGCAACTCCTTCCCGCCGGGGTCTGTGCTGCAAAAGGACTGCGGGAACTG
Seq A exon
CACGTGCCAGGAAGGTCAATGGCATTGTGGGGGTGACGGTGGCCACTGTGAGGAGCTTGTGCCTGCCTGTGCAGAGGGAGAGGCCCTGTGCCAAGAGAATGGGCACTGTGTGCCCCATGGGTGGCTTTGTGACAACCAGGACGACTGTGGCGATGGCTCTGATGAGGAGG
Seq C2 exon
GTTGTGCCGCCCCAGGCTGTGGGGAGGGGCAGATGACTTGCAGCTCCGGCCACTGCCTGCCCCTGGCCCTGCTCTGTGACCGCCAGGATGACTGTGGAGATGGCACGGATGAGCCGAGCTATCCGTGCCCCCAGGGCTTGCTGGCCTGTGCCGATGGACGCTGCCTGCCGCCGGCCCTGCTCTGCGATGGGCATCCTGACTGTCTGGATGCCGCCGACGAGGAGTCCTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGTGCTGCAAAAGGACT
R:
CGGCATCCAGACAGTCAGGAT
Band lengths:
244-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development