MmuEX6004246 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48460200-48461004:+
Coord C1 exon
chr6:48460200-48460293
Coord A exon
chr6:48460377-48460546
Coord C2 exon
chr6:48460771-48461004
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCAGGCCTCTGTGGGCTCAGCAC
3' ss Score
1.94
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GAGGAGCCTGCATGAAGCTGGCTGCCTGTCCCTGTGAGTGGCAGGGCAGTTTCTTCCCACCAGGGACTGTGCTGCAAAAGGACTGTGGAAACTG
Seq A exon
CACGTGTCAGGGAAGCCAGTGGCATTGTGACCGTGGTGGTGCCCCATGTGAGGACATGGAACCTGGCTGTGCAGAAGGAGAGACTCTGTGCAGAGAGAATGGGCACTGCGTGCCACTTGAATGGCTTTGTGACAATCAGGATGACTGTGGTGACGGCTCAGATGAGGAGG
Seq C2 exon
GTTGTGCCACCTCAGTCTGTGGGGAGGGACAGATGTCTTGCCAGTCTGGCCACTGCCTGCCCCTGTCCCTGATCTGTGACGGGCAGGATGACTGTGGAGATGGCACAGATGAGCAAGGGTGCCTATGTCCCCATGGCTCTTTGGCCTGTGCTGATGGTCGCTGCCTACCACCTGCCCTGCTGTGTAATGGTCATCCTGACTGTCTGGATGCTGCAGATGAAGAGTCCTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'19-38,'19-27,30-38=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(15.8=28.1)
A:
PF0005713=Ldl_recept_a=PU(94.7=62.1)
C2:
PF0005713=Ldl_recept_a=PD(2.6=1.3),PF0005713=Ldl_recept_a=WD(100=46.8),PF0005713=Ldl_recept_a=WD(100=45.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTGTGCTGCAAAAGGACT
R:
CTGCAGCATCCAGACAGTCAG
Band lengths:
247-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types