DreEX0065081 @ danRer10
Exon Skipping
Gene
ENSDARG00000062352 | sema4ab
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
Coordinates
chr19:24741296-24790133:+
Coord C1 exon
chr19:24741296-24741522
Coord A exon
chr19:24769718-24769967
Coord C2 exon
chr19:24789976-24790133
Length
250 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTTTGTCTAAGCAGATG
3' ss Score
7.91
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GGAAACAATAGAGAGAAGCAAGCTTTTACATGAAGACGAGCTGCTTATAAAAAAACGAGTTACTAACGTGTTACTAACCACAGACTCTGCGCTTCAGAGTTCCCATTATCTGGAGTACCAGCGTCATCTGGGAGTTCGTCAGAAATTGTTGTAACCTACACAAACGAGAGACTATCATAACAACGCTGGAGCCAAACATAACAGATCCAGGAGAAGCACATTTTGAT
Seq A exon
ATGAGATGACGGCAGACTCCTTTGGCTGTTTGAAGTGGTGTCTTTGTGGGCGACTCAGTGCTGAACGGACGCCAACAGAAGGAAACAGAGACAGATAGACCAGTATTTGGAATCAGCTTATCTGTTTTCCTCCTGGCCTCCTGGTTTTCCATCAGGATGGTGATTTCGGCATCACTTTGTGCCTGTGTGTTTCTTCTGACTGCCGTCAGGTGTCATTCTCATGTCCTCCCCCGACTCTCTTTTCCAATGG
Seq C2 exon
GTAGTCCAGGTCGCTCTCTCACCGTCTTCACAAATGATGATAGTTACAACGCCACCACATTGTTGCTTAGCAACGATGAGGGCACCTTATTTGTTGGAGCACGTGATACCATTCTGTCAATCAACATCAGTCAGACTGATATGACATTGAAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062352_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(8.4=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTACATGAAGACGAGCTGC
R:
ATAAGGTGCCCTCATCGTTGC
Band lengths:
296-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]