RnoEX0079301 @ rn6
Exon Skipping
Gene
ENSRNOG00000019737 | Sema4a
Description
semaphorin 4A [Source:RGD Symbol;Acc:1304636]
Coordinates
chr2:187814653-187820952:-
Coord C1 exon
chr2:187820903-187820952
Coord A exon
chr2:187816510-187816677
Coord C2 exon
chr2:187814653-187814813
Length
168 bp
Sequences
Splice sites
3' ss Seq
GAAAGTGCCTGTTTCCTCAGAAC
3' ss Score
5.27
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GCGCCTGGCATTCCAGGGGGAGGGAAGCACAGCGGAATCCCAAGCTCCAG
Seq A exon
AACCATCTGGTGACTGTCTCCGGATGACCATGGCCCTACCATCCCTGGGCCAAGACCCCTGGAGTCTCCTGAGTGTTTTTTTCTTCCAACTGTTCCTGCTGCTGTCACTGCCACCAGCTTCCGGGACTGGTGGGCAGGGACCCGTGCCCAGAGTCAAGTACCATGCGG
Seq C2 exon
GAGATGGGCACAGGGCCCTCAGCTTCTTTCAACAAAAAGGCCTCCGGGACTTTGACACCCTGCTCCTGAGTGGAGATGGCAACACTCTGTATGTGGGGGCTCGGGAGGCCATCTTGGCCCTGAATATCGAGAATCCAGGAATCCCAAGGCTGAGGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019737-'1-15,'1-13,8-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(36.4=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCAGGGGGAGGGAAGC
R:
CATGTTCCTCAGCCTTGGGAT
Band lengths:
202-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]