DreEX0065737 @ danRer10
Exon Skipping
Gene
ENSDARG00000103595 | sfxn5a
Description
sideroflexin 5a [Source:ZFIN;Acc:ZDB-GENE-090312-174]
Coordinates
chr13:14930196-14939826:-
Coord C1 exon
chr13:14939773-14939826
Coord A exon
chr13:14937918-14937974
Coord C2 exon
chr13:14930196-14930286
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTCAGTGTCTTTTTCACAGTGG
3' ss Score
6.82
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTCGTAGGCCTATTGTTACCCAATCAGACATTTTCTTCTACCATCTTTTGGCAG
Seq A exon
TGGCTGAACCAGAGCCACAATGCCTGTGTCAACTACTGCAACCGTAATGCAACTAAG
Seq C2 exon
GTGGGGCTGAATGTCCTTATTAAGAGAGCTGAGCATTTCAGTCCGGCTACGAGGATCCTGGTCCAGCGGTTCATCCCATTCCCTGCTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103595_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(5.8=100)
A:
PF0382012=Mtc=FE(6.1=100)
C2:
PF0382012=Mtc=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTAGGCCTATTGTTACCCA
R:
CAGCAGGGAATGGGATGAACC
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]